RNA id: XM_043259221.1


Basic Information

Item Value
RNA id XM_043259221.1
length 1365
RNA type mRNA
GC content 0.59
exon number 8
gene id mmp28
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 7111256 ~ 7119286 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTGTGTTGGCTCGCGCGAGCACGTGCCTCTGAGGCGGTGGTTCTGATCGGCGCGCGCCGGAGGCGGGCTTCTGCTCTCGAGCCGCTCGGGATCCGTGTTCATGAGGGCTTTCAGAGAGAACGGATGGAGGCGTCCGTGCTGCTGCCCGTGCTGCTGTGCGTCCAGTCCGCCGTCAGCTCCCCGGTGTCCACGGCCGCTCGGGCTCAGGGCTTCCTGGAGCGTTACGGATACCTGAGCGAGGAGAACGAACCTCACAGCGCGGATGAAGTCAAGTCTGCCATCAGAGAGTTTCAGCGGTTGTCTCAGCTGCCCGTCACTGGAGGACTGGACCGGGTCACTCTGGAGAAGATGAGCTCGCCCCGCTGCGGGGTTCAGGACGTCTGGGGTCAAGAGGTCATCGGCAGCCTCACAGGCCCACGGCTCCGGAGGAGGCGCTCCGCTCAGACAGGAGAGAAGTGGCACAAACGTCACCTGACGTATCGGATCATGAACTGGCCGCATAATCTGTTTCCCAGTCAAGTGCATATGGCCGTGAAGACGGCGTTCCAGCTGTGGAGCAATGTGTCCGGACTGATCTTCCAAGAGCTCCAGCAGGGTCCTTCTGACATCCGACTGGCCTTCTTTGAAGGAGAACATAATGATGGGACAGGAAATGCATTTGATGGGCCAGGGGGCGCTCTGGCTCatgcttttttccccttccGCGGTGAAGCTCACTTTGACCTGTCTGAACGCTGGACCCTGAATGGTCTCAAAGGACACAACCTGTTCTTGGTGATGGCTCATGAAATCGGCCACACTCTGGGCCTGCTGCACTCTCCTGTGCGTCACGCTCTCATGTCACCGTACTATAAGAAGAGGAGCTCGAACGCACTGCTCAGCTGGGATGATATCACTGCGGTACAACAGCTGTACGggagGCCAGCGGGGGGGTCAGCGCAGCAGACGGTGGGACGGGCTCTGAGATGGGTCTCGAGGAACTGGCAGACTTCTCCAGGCCCTGAAGGAGGTTCCTTCACACTCCAGTACTGCCGGGGCTCCTTTGACGCCATCACCGTGGGTGAGAACGGGACAGTGCTGGTGTTTCAGGGCCATCGTTTCTGGACGGTGTCTAACGGCAGCGTGAGCTCTCCTCTGCCTCTTCAGACTCGCTGGCCAGGGCTGCCATTGGCTATCGAGGCAGCGGCCTTCTCTCCACTCCACAGCAAACTATACTTCTTTAAAGCCAGCGCCAAAACCTTTAGCGATGCTTCCTCTTGTCAGGGCGGCGGATCTGGCGTTTCTCAGGCTCCGATCTGGACCCAGGTTTCCCCGTGAAGAGCAGTGATCTGGGCTTGCCGAATCACCCTGACTGTGCCTTCTTC

Function

GO: NA

KEGG:

id description
K08006 MMP28; matrix metalloproteinase-28 (epilysin)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153959 lncRNA downstream 13189 7042394 ~ 7098067 (-) False G104252
TU153961 lncRNA downstream 25724 7042394 ~ 7085532 (-) True G104252
TU154033 lncRNA downstream 72064 7037726 ~ 7039192 (-) True G104314
TU154011 lncRNA downstream 74426 6806292 ~ 7036830 (-) True G104294
XR_006252639.1 lncRNA downstream 190996 6919910 ~ 6920260 (-) True LOC122358744
TU154424 lncRNA upstream 370879 7490106 ~ 7490776 (-) True G104570
TU154431 lncRNA upstream 377759 7496986 ~ 7497259 (-) True G104572
TU154447 lncRNA upstream 390907 7510134 ~ 7513305 (-) True G104585
TU154452 lncRNA upstream 404599 7523826 ~ 7524108 (-) True G104589
TU154458 lncRNA upstream 426729 7545956 ~ 7547059 (-) True G104595
XM_043258796.1 mRNA downstream 36998 7062700 ~ 7074258 (-) False LOC122358868
XM_043258795.1 mRNA downstream 36998 7062700 ~ 7074258 (-) True LOC122358868
XM_043258573.1 mRNA downstream 87792 6799376 ~ 7023464 (-) True LOC122358733
XM_043258563.1 mRNA downstream 117072 6985330 ~ 6994184 (-) True LOC122358727
XM_043258564.1 mRNA downstream 251465 6841945 ~ 6859791 (-) True LOC122358728
XM_043259216.1 mRNA upstream 835 7120062 ~ 7126137 (-) False taf15
XM_043259217.1 mRNA upstream 835 7120062 ~ 7126137 (-) False taf15
XM_043259215.1 mRNA upstream 835 7120062 ~ 7126136 (-) True taf15
XM_043259220.1 mRNA upstream 835 7120062 ~ 7126109 (-) False taf15
XM_043259219.1 mRNA upstream 835 7120062 ~ 7126108 (-) False taf15
TU153584 other downstream 964739 6146173 ~ 6146517 (-) True G104011
TU153427 other downstream 1361917 5744532 ~ 5749339 (-) False pgm2l1
TU153319 other downstream 1672309 5438048 ~ 5438947 (-) True G103825
TU152826 other downstream 3294514 3816062 ~ 3816742 (-) True G103449
TU152821 other downstream 3356089 3753341 ~ 3755167 (-) False LOC122359312
TU154467 other upstream 450619 7569846 ~ 7572090 (-) True G104603
TU154509 other upstream 520417 7639644 ~ 7640339 (-) False G104628
TU154511 other upstream 520417 7639644 ~ 7640339 (-) False G104628
TU154597 other upstream 838609 7957836 ~ 7958231 (-) True G104695
XR_006252682.1 other upstream 925595 8044822 ~ 8050710 (-) False nipsnap2

Expression Profile