RNA id: unassigned_transcript_2146



Basic Information


Item Value
RNA id unassigned_transcript_2146
length 74
RNA type tRNA
GC content 0.61
exon number 1
gene id trnaa-ugc_117
representative True

Chromosome Information


Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 9395237 ~ 9395310 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ggtgccgtggcttagccggtcaaagcgcctgtcttgcaaacaggagatcctgggttcgaatcccagcggtgcct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU155007 lncRNA downstream 1029 9393877 ~ 9394208 (-) True G104976
TU155006 lncRNA downstream 2997 9392033 ~ 9392240 (-) True G104975
XR_006252658.1 lncRNA downstream 99726 9264495 ~ 9295511 (-) True LOC122358921
TU154948 lncRNA downstream 160150 9234870 ~ 9235087 (-) True G104936
TU154923 lncRNA downstream 254815 9140058 ~ 9140422 (-) True G104922
TU155099 lncRNA upstream 25779 9421089 ~ 9423926 (-) True G105020
TU155100 lncRNA upstream 25779 9421089 ~ 9423123 (-) False G105020
TU155098 lncRNA upstream 28920 9424230 ~ 9432131 (-) True G105019
TU155148 lncRNA upstream 144281 9539591 ~ 9540814 (-) False LOC122359087
XR_006252683.1 lncRNA upstream 144752 9540062 ~ 9541822 (-) True LOC122359087
XM_043258365.1 mRNA downstream 81781 9311086 ~ 9313456 (-) True nppc
XM_043259001.1 mRNA downstream 91364 9297101 ~ 9303873 (-) True ncl
XM_043259304.1 mRNA downstream 143296 9249918 ~ 9251941 (-) True polr2h
XM_043259838.1 mRNA downstream 146583 9238021 ~ 9248654 (-) True mfsd8l1
XM_043259162.1 mRNA downstream 349122 9038896 ~ 9046115 (-) True LOC122359046
XM_043259313.1 mRNA upstream 13536 9408846 ~ 9414948 (-) False p4ha3
XM_043259312.1 mRNA upstream 13536 9408846 ~ 9414948 (-) False p4ha3
XM_043259311.1 mRNA upstream 13536 9408846 ~ 9414948 (-) True p4ha3
XM_043259319.1 mRNA upstream 23757 9419067 ~ 9420570 (-) True or95a1
XM_043259320.1 mRNA upstream 23757 9419067 ~ 9420547 (-) False or95a1
unassigned_transcript_2145 other downstream 184 9394964 ~ 9395053 (-) True trnar-ucu_51
unassigned_transcript_2144 other downstream 556 9394608 ~ 9394681 (-) True trnat-agu_64
unassigned_transcript_2143 other downstream 828 9394336 ~ 9394409 (-) True trnat-ugu_47
unassigned_transcript_2142 other downstream 1041 9394123 ~ 9394196 (-) True trnat-agu_63
unassigned_transcript_2141 other downstream 1341 9393823 ~ 9393896 (-) True trnat-cgu_33
unassigned_transcript_2147 other upstream 220 9395530 ~ 9395603 (-) True trnat-agu_65
TU155103 other upstream 39116 9434426 ~ 9436797 (-) True G105022
TU155104 other upstream 39116 9434426 ~ 9436797 (-) False G105022
TU155158 other upstream 157324 9552634 ~ 9555787 (-) True G105059
TU155454 other upstream 368561 9763871 ~ 9796890 (-) True dynll2a

Expression Profile