RNA id: XR_006252683.1


Basic Information

Item Value
RNA id XR_006252683.1
length 1388
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id LOC122359087
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 9539591 ~ 9541822 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gctgAACATAACACATAGCGTGAGACGATCACGACTAAACTACACGAAAAGCAGAATTCTCCTGTGTTTCATGACACGCTTAACTTGGCTTTACTTTAGTGAAAATGCACGATTGCTCTCTAAACTTCACCAGCGCTAACATCTGAACAATAACCCAGCTACATGTCATGTTTTCCTATTTTACAACACTAGGTGCATTATCACCGTACATCACAGAGAAGTGTGCGCACATCCCCCACTTCCTTCTGTGCGTGTCAAACGAGAGTTTGAGGTTTGGGTTGTCTAGACAACGAGTCCATCTCGTGCGCGTAGCGTTCAGGAGAACGAGAGAGCGTCCTCCTGTTTGTCGAACAACCACGTACCCGGCAAAAATGCTGAATTCAAGCATCGGAGGAAAGTGGCGGCAAAGAAAGCGTGTCTGATAATCTCATTTCAGGTCAGGCGTGCGATATATCGAAAGACTGTTTTACTTATCGGCCTCTTAGCGAGCAATTAGCAAGCCACCGCTTCGAACTCCTCTTTTATGACATTTATGTGACTCAATACCACACCCTCATATTGGACTCAAAGTATATGTAACATGCTGATGAAACACGCCATAGCCAGCCCCCCTTCCCCTCAGGAAAGAGCTCTACGAGAACATGCTTCAAATCTTCAACTTATTAATAAGCCATTGATAAGAATAAGCGCATCATCTTCCACCGATGATAGCGTCTCACCGACCAGCGCtggtttttttacaaaaaaaaaacaatacaccaACTCACGGCgtatcatatttttaaagccATGCCGTCAGACTATGTGGAAGCCTGATGCAATCCGATCACATGTTTACTGGACTTCCTCTTTACTTCTTTGTGTGATTTTATGTATGCTGAAGACCGAGggcttttctctcatttctgaTCTGACTTTTATCGGTTAAAATGCCCTTAAAAGGAATTGATTCGAGTCCGTCTTCGAGCGAAACTCGCTGTAGTCCAATAGGCGTGCATTTGCGCTTCTTTAAGACAGCGACTGCAGGGCCTCTTCCTGTGGTTTGCACCATGTGGcctaaaaagtgttaaaaggCGACAACTTCTTTCTCTTTTCGCTGTTGTTTCCGGGATCAGGCGGGCAGAGAACTGgttcaAGAAATAGCTGTAAAACGGACATTCGGAGCACATGGAGATAAGAGGAAGCGCGTGAAGAGAAGAGGCGGGAACGTCAGTGCAGTCACTCATAAAGTAGACAGCACTACTAAAGGTCTCTACACGGTGTAGTGTTTCCTACTTTATGGATGAGTGTACTGTTTGCTGCGAAGGACGATCTCGCGGAGAAACCAAGCGATGCTGGATTCCGAATGACTTGTTTATGAATTGTTAATAAATGATGGTGTTTTTCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155098 lncRNA downstream 107931 9424230 ~ 9432131 (-) True G105019
TU155099 lncRNA downstream 116136 9421089 ~ 9423926 (-) True G105020
TU155100 lncRNA downstream 116939 9421089 ~ 9423123 (-) False G105020
TU155007 lncRNA downstream 145854 9393877 ~ 9394208 (-) True G104976
TU155006 lncRNA downstream 147822 9392033 ~ 9392240 (-) True G104975
TU155150 lncRNA upstream 494 9542316 ~ 9543148 (-) True G105055
TU155151 lncRNA upstream 655 9542477 ~ 9543148 (-) False G105055
TU155162 lncRNA upstream 10099 9551921 ~ 9552439 (-) True G105062
TU155445 lncRNA upstream 156694 9698516 ~ 9698735 (-) True G105269
TU155448 lncRNA upstream 162914 9704736 ~ 9705004 (-) True G105272
XM_043259238.1 mRNA downstream 4946 9530883 ~ 9535116 (-) True ywhag2
XM_043259351.1 mRNA downstream 42428 9494048 ~ 9497634 (-) False rrp8
XM_043259350.1 mRNA downstream 42438 9494048 ~ 9497624 (-) True rrp8
XM_043259319.1 mRNA downstream 119492 9419067 ~ 9420570 (-) True or95a1
XM_043258232.1 mRNA upstream 18470 9560292 ~ 9565762 (-) True proca1
XM_043259898.1 mRNA upstream 26838 9568660 ~ 9572734 (-) True rab34a
XM_043259899.1 mRNA upstream 26838 9568660 ~ 9572726 (-) False rab34a
XM_043259900.1 mRNA upstream 26838 9568660 ~ 9572718 (-) False rab34a
XM_043259901.1 mRNA upstream 26838 9568660 ~ 9572714 (-) False rab34a
TU155103 other downstream 103265 9434426 ~ 9436797 (-) True G105022
TU155104 other downstream 103265 9434426 ~ 9436797 (-) False G105022
unassigned_transcript_2147 other downstream 144459 9395530 ~ 9395603 (-) True trnat-agu_65
unassigned_transcript_2146 other downstream 144752 9395237 ~ 9395310 (-) True trnaa-ugc_117
unassigned_transcript_2145 other downstream 145009 9394964 ~ 9395053 (-) True trnar-ucu_51
TU155158 other upstream 10812 9552634 ~ 9555787 (-) True G105059
TU155454 other upstream 222049 9763871 ~ 9796890 (-) True dynll2a
TU155453 other upstream 251926 9793748 ~ 9796890 (-) False dynll2a
unassigned_transcript_2150 other upstream 661505 10203327 ~ 10203413 (-) True trnastop-uca
TU155809 other upstream 971372 10513194 ~ 10514062 (-) False atf5b

Expression Profile