RNA id: XM_043258232.1


Basic Information

Item Value
RNA id XM_043258232.1
length 4632
RNA type mRNA
GC content 0.46
exon number 4
gene id proca1
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 9560292 ~ 9565762 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATAACTATaccatggaaaaaaatataggGGGAAACACTAAACGACTAAACGCATTTATGCGCAGTTGCACCTCATATGCATCCATAAAATCCACAAAAGATCGAAATTATGATTCAGtggatcatttcatttttgaatctTTTAGTCTTTTGCGttttattttctgaagaaaTGTCCAGCCCGGTCTCGTGGAAATgcataaacaatacaaaaaaaaaaaaaccggcGTATTGATGCGCAAAACGGCTTTTGGCTTAAATATGACACGCACGTGTCTGGCGTGCATATAATTAGCAGTTTTCACGTACACGTCATCCAACAACCCTAATACCATCGCGCACGATATACACGCCAAGTTAACCTCGTATCAGATGGGAAAAGGGTTCCTTTTTTGATATCCGAAAATCACGCGCAATCAAAGAGAACGGATTCCGGCGCAGGCCTACATCAAACCTCACGAGCACGGTCATGAAAAGTGTTCTGCTCCAAGAACTGATGTGCTATAGCATAATAAACCCTTTAAAGAAAATGCGCCGTGGTGAAGCAGCAGTTCGTGGTGCAGGCTCACGCGCTGGTTAATAGTCTGGCAAAAGTTTTTAATGAGCAGGCAATTAAATGAATACTACATCGGACTGATTTTCCAACAATGTCGCATGTTGCCTCTGGTGATTTTACATCATTTGCTTCCTCCCCCACCAATCCGATTTCTCGGCCAAAGCCCACTGTTGGACTCAACGGGGGCTCTCTGAAAGCCGCCCataaatattttgcttttagACTTGCGCGTAGCCTGCTCAAGTCCTGATCGATTTGGTCATTTTGTTAGTACCCGCACCTTTTTCAGCAGATATGGGCTAGCctgtgttaataaataataatgagttaaatacataataataaccCGGGACGGACGATATTAACCGTATGATGTTTTTCTTAGAATTGCAGCACTGGTGAGCTACAAAGGCCTTGTTAAACGACTTCAAAAGCAACAGCCACACGAGCAATTGCCATTTAATTCACATACAGACAACGGCAAACGTGGGTTCTCTCCTCAAACGACTCTTTTTCACTTTACTGGCGCCCGCGTCTGCTAAAAGTCCCAAAGTCGAGATCCGCGTAACCATAGGAAAACGCGCCGACGTTCGGCAACCGCGCGGAGATCTTCATTGGTCTGCATTGAAAAAGCCCACTGTTCCAAATTAGGTCACTACCCATTTCTTTTGTGAAATTAGAATGCCCAATCTCGTTGGGTCGGGAGAATCACCCCATCTCTTGTTACTATGGAAAGCGCCGAGAGGAACCTCCTCCTTGCTGCGTCACCGAAGTAAATCTCGAGGTGTGGGGAGAGATGGGGTTACTTGCggtcagaacacacacacacatatatccaTTACACCCTACATTCATCATGCGGGATTACAAATTCCGGTGCGCGTGCACACAGCAAACACTGCTTGATTAAAAAGAACCTGCGTTTAAAACAGttaaccatgtttttttcctctgtgaTGTGACTTTGAGGGGTTTAAGTGGGTCATCTTTTAAGTAGTGTGTTCAGACGTTTCATCTCTCCTAGCGCAGTCACCTCAACTCAAAGAGGATTGAAACAAAACACCAACTGCATTtgcgataaataaataaacggatGAATTGCTTGCgatctgactttttttattattaatttgacgTTGTTTGAAAGCAcctaaatatatctaaaaatatgaGTCTAAATAGAATTAATACCCTGCGTAAGGTTGCATTGAATGGGCTATACTTGCAATTCTGTTTTAGGCTACGCATGCTTTTAACCGTAACGCCTTGCCTTCTATCGTCTTAAAACGTAATTAAGAAATAAGAATAAAGCGGAAAGAGCTATCTCTCGCAAATCAGAGAAATACGAATTTGCATTTTGCACGTATATAAGGTCCGCTGGGAATGAGAGTACGCTGGAAATCATTGCACATTGTTCACTTGCCACGGGAACGCCAGGAGGAGGAAACAGATGCACATTAGGGTATTCAGGTTCATTGGAGGAGGAAAGGGTTAATTAAATGACAGACCCCTCCCATTATTGAACGGCAATATATTAATAGGCACGGCAGCCGGTGAAAGAAGCCGGTGCTCGTCGGAGAGGAGAGGCTGCGGTGCTGTCTGAGACTCCGTGGTGCTGAAAGTGCCGCCCGCCGCGATGTGGTCCGTGTTTTTCGTGTTTCTGTCTTATCTAGACAGGAACTTCGTCAAAGGCGAATTCCTGAGCCAAGCTCTAGACgcagaaaaagagagcaaagagCTTTTTTACATGCTGAACAACACTCTTTGCGCCAAAAGTTCGGTCGCGGGAGAGTATCACCTCCATCAGGTCACCGACGGGGCTGAAGAGGTCCGCTCGGTGCACGACTCCGAGGGCCGCCTGGTCGACTGCTCCGTCATCCAAAACCAAATGCAGGTCAAATCCTTCATGCACGTGTGCAGACTCGGGCTGAGGAACCAAATGGGCTCCGATCTGAAGATGAGTTTGACCGGGGTGTCCGAGGCGAAGGCGAACTGTAGAAAGCTGAAGTCTAAAGGCGACAGGAACGCGATCGCGACGAAACGAGCAAAAGAGGCGAAGTCCGACGCGGCGAACGGCAAAAGACGCGAGCCAAGCGAGGCTTCACTTATCCCGGGACGCTTTGGTGTGGAGCAGGAAACATCGCGGACACTTACGATCAGTTAGGAGAATTTGAAGAGACCGACAAGTGTTGCCGCGTTCACGATCACTGCCCCTATGTCATCCATGCGTTCTCTTCCAATTATGGATATACCAACTTTAAATGGCACTCCCTTAGCCACTGCGACTGCGACAATAACTTAAAGGAATGCCTGCGACTTGTCAATGACACTTCTTCCCGAGTGGTTGGACAAGCATTCTTCAATGTGATCGAAGTCCCTTGCTTTGAGTTTACCTTTGAAGAGCAGTGTGTTGAGCGTCACTGGTACGGGGTGTGTAAGAAGTATGACAGAGTTCCTGTAGCAGTAATTAAAGAATCAATCCCTTATGACTTTGGAGGCATTGATGTCATTGATGTATTGACAATCGCTCCTCCCAAGATGAAATTATCAGATGAAGAAAAGCAGAATGCGACAACCTCTGAAAGCACAACGCAGTCATCGGTCGAATCAAAGACCGCCGCTCCAGAAGAGCCCTCGCTCACTAACGTGGTGACGGCTGCGGAGGATTTCATTAAAGTGCTCGCCACAGTCTCCACCTCTCAAAGCTCGTCCGCAGACGCAGGTAAAGGAGAAACTCAGACGtcagagaagaagaggaagaaaaactccagcaagaagaaaaaagaaaacaagaagaagAGAGGAAAGGGTAAAGGCAGGAAGAAGAACAAAAAGCTTGACGCCGTGTTAAAGGTCGACGAAGGAACCACCGGAGCTCCGCCGACCGGTCAAACGGAGGAGGTCATGGGTAAGAACAACTTTGCGGAGGGAGCAGCGAGGATGAATCGGTTTAGGATAAAAGACAGCAATTTCATGAACAGCGAGCTAGACTCTGAAGGAAATACTAATAAGATGATGAGAGATGATCCTCAGAGGACAGTGAATGTTAATCAGGATGTTGTTACCGTTACTGCCTCGATAAAGAGGGATAAAGAACCAGGGATTGTAGAGCACAGTCAGGCAAACGGCACAGAGTTAGTCTCCACCTCTCCTACAGCTCACATTACCCCAGTTGTGCACGATAAGACCAGAGCTAAGCTGAGACAAAGAGCTGGaaagaaaaggcaaaaaaaacccaacccTATTACAGAAGCCAAGGAAGAAACTCTCTCGACTAGACAGTCTGAAGGTGTCAGCCTCTTAACGCCGACACCGGAGAGTCCAACGGCCGCTGTAAGGAACGAGGCGAGTACCATTCACGCGGAAGAAAAGGGACCTACTACACAAAAAACACCCATTGTTAGAACAAAAAGGCCAGGTTCGGTAAAGGgagaaggaagaaagagaaCGAGAAAAGTCATTGCTTCCTCTACAGAAGAAACTCCTCGTGATATCAGCTCTCAGGATCCATTGCTGTTCACAGGTTCTGCAACTGTCACGCAAAGCGATGTACTAGAGAGACTGGGATTGGACCGATTCGAAAAACCATCGGAAAGTTTGAGGGACAGCAATGCCAGAAGGAACAAAGGAAGGCGTGTAGTCAAAATCTGCTACGAAGCCGTTTTGCCCGAAGCCGCAGACACGACACCCCTCACAACTCTGATCGAAAAGGACACCGAGTCTCAGTTGAAGGATCCTGAGATAAACACGGCACCAATGTTTCCGCTCCTACAGACTAACACGCCATCCTCGGCAACCCGCAGACCTaggaacacaaaaataaagagacACAGGGAGCGAGGAAATCGAGAAAAGCGTGGAAAAGCTAAGAGAGAATGAAACTCAAGAAGCTCCACGTGGTGCGACCAAATGGTTTTTTTATCTCCTAGGCTGCCATATGATATTGTTTTAACAAGCAGCATGTTTTTACCTTCTCTGTTTTTATAGCTCCGTTGATGGTAGACTGACAGATCAGATCAGTTTTATGAAGCATGTGTTTCCCGACATGATTGCTGAATAAAGTAAATAGAGCATTGG

Function

GO: NA

KEGG:

id description
K01047 PLA2G, SPLA2; secretory phospholipase A2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155162 lncRNA downstream 7853 9551921 ~ 9552439 (-) True G105062
TU155150 lncRNA downstream 17144 9542316 ~ 9543148 (-) True G105055
TU155151 lncRNA downstream 17144 9542477 ~ 9543148 (-) False G105055
XR_006252683.1 lncRNA downstream 18470 9540062 ~ 9541822 (-) True LOC122359087
TU155148 lncRNA downstream 19478 9539591 ~ 9540814 (-) False LOC122359087
TU155445 lncRNA upstream 132754 9698516 ~ 9698735 (-) True G105269
TU155448 lncRNA upstream 138974 9704736 ~ 9705004 (-) True G105272
TU155449 lncRNA upstream 139913 9705675 ~ 9705964 (-) True G105273
TU155456 lncRNA upstream 150247 9716009 ~ 9716310 (-) True G105277
TU155458 lncRNA upstream 154171 9719933 ~ 9738643 (-) False G105278
XM_043259238.1 mRNA downstream 25176 9530883 ~ 9535116 (-) True ywhag2
XM_043259351.1 mRNA downstream 62658 9494048 ~ 9497634 (-) False rrp8
XM_043259350.1 mRNA downstream 62668 9494048 ~ 9497624 (-) True rrp8
XM_043259319.1 mRNA downstream 139722 9419067 ~ 9420570 (-) True or95a1
XM_043259320.1 mRNA downstream 139745 9419067 ~ 9420547 (-) False or95a1
XM_043259898.1 mRNA upstream 2898 9568660 ~ 9572734 (-) True rab34a
XM_043259899.1 mRNA upstream 2898 9568660 ~ 9572726 (-) False rab34a
XM_043259900.1 mRNA upstream 2898 9568660 ~ 9572718 (-) False rab34a
XM_043259901.1 mRNA upstream 2898 9568660 ~ 9572714 (-) False rab34a
XM_043259024.1 mRNA upstream 150937 9716699 ~ 9760170 (-) False synrg
TU155158 other downstream 4505 9552634 ~ 9555787 (-) True G105059
TU155103 other downstream 123495 9434426 ~ 9436797 (-) True G105022
TU155104 other downstream 123495 9434426 ~ 9436797 (-) False G105022
unassigned_transcript_2147 other downstream 164689 9395530 ~ 9395603 (-) True trnat-agu_65
unassigned_transcript_2146 other downstream 164982 9395237 ~ 9395310 (-) True trnaa-ugc_117
TU155454 other upstream 198109 9763871 ~ 9796890 (-) True dynll2a
TU155453 other upstream 227986 9793748 ~ 9796890 (-) False dynll2a
unassigned_transcript_2150 other upstream 637565 10203327 ~ 10203413 (-) True trnastop-uca
TU155809 other upstream 947432 10513194 ~ 10514062 (-) False atf5b
TU155899 other upstream 1093175 10658937 ~ 10661150 (-) False cryaba

Expression Profile