RNA id: XM_043259351.1


Basic Information

Item Value
RNA id XM_043259351.1
length 1909
RNA type mRNA
GC content 0.44
exon number 8
gene id rrp8
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 9494048 ~ 9497634 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAAGTTGTCGCGGTAACCCGGATGTACACAAAACCACGTGACGGCTCATCGCACGTGTGGAAGAGCGAGAAAGATTTTTTACAAACATGTTTGCTGAAGAAGAATGGGCCGAGCCTCTAATACCAGATGTATCATCTCACACCGTTAGCAAGTCTCCTGCCTCCAGAAAGAATAAGGTTGTGGGTAAACGAAGCCTTTTGAGAACCTTGCAAACGCTGGGTTCAGTTCCAGACTGGGGAGCCGGGGATGCTGTAGAGGATAGCGACGAAGAGAAGGACGCCTCCGCTACAGtcaaaccagaaaaaaagaaaaggttgaAAAAGCGTAAAAGAAAGTCTAACGCTGAAAACGAAGGAACGCAGCAGGATAAAGGGGACACATCTGAACCGCCTGTGAAAAAGAAGAAGCAGCCAAAAAAGAAGACCGTTGAAGAAAAGAATTCTAAAGCGTCACGAGAGTCCAGAAAATATGAGATTGGCAAAGGAGACGGACCTCAGCTGGAGAAAAATGAAAGTCAAGCAGAAAACAAGCTAAGCAGAAAGCAGTGGAAGAacaagatgaaaaacaaaagaaagagcaaGAACAAATATCTTCCCAAAACGACAGGCGTAGAGGATTCCAGTGCAAAGGAGGAACCGTTAGTTCAAACACAGGATATCAAAGAGCTTAAGAAGGTGAAGAAACATGACAAGGCGTCCCAAAAAACGAAGAAATCCCATAAAAAGAATGGTGTTTCCTTCACGGACGGTGCTCAAAATTGCGAAAACTTTAAAACAGATCAAATGCCCAGCACAGGAGCTGGAGAAGTAGAAGTAGATGAATCCCTGAGTAATAATGCAGTCTCGCATAAAGTGGACGATAAAGTGAAACATACGAAAGTGATGAATAGATCACGGGTAGAAAGGTTGCGCCACATTTTTAAGTCGCAGCTTCCCGATGACGGCGATAAAGCCTCGGAGGAACCAGAAGAGCTCAAAGATGCAACAATAAGTCTGAAGGGTCATGAAGAGCGAGTGGCTCCTGACCCCTCGGCTGCTTTAAGGACGAAGATGGAGAAGCGGTTAGAAGCCGCTCGATTCCGCTACATCAATGAGCAGCTTTACACGTCGACCAGCGGCGAGGCCAAGCGCATGTTTCAGCAGGACCCAGAGGCCATTGCAATTTACCACAAGGGCTACATGGCACAAGTTCAGCACTGGCCCACAAACCCTGTGGATTCAATCATTTCCTATATCTGTAAAAAacCAACTTCTTTAGTAGTTGctgacttcggctgtggagactGTAAAATAGCTCGGAGTGTAAAGAATAAAGTGCATTCTTTTGATTTGGCTCCGGTTTGTGATCTCGCCACCGCATGCGACATGGCAAAAGTGCCGCTTCGTGACTCTACTGTAAATATTgctgttttctgtctttctttgatGGGGACAAATCTGGGAGACTTTTTGGCAGAAGCTAACAGAGTCCTGGTGATGGGGGGCGTTCTTAAAATTGCTGAAGTGGCCAGCAGGTTTGAAAATGTGCGTTCGTTCATTAGTGCGTTGTCAAGTCTGGGCTTCAAGTTAGTACAAAAGgaCACAGAAAACAGCCACTTTTTCACCTTTGAATTCATAAAGACTGGAAAAGCACCTGGGAACGTGAAGAAAGTCGGTCTTCAGCTTAAACCTTGTCTGTACAAGAAACGATAAATGTACATAAAGTGAATATTTTGCTACTTTATGTATGGACTGTGCATGACGTTTTATGAGCAAGTCAAATCTCTTCTTAACGTTGgtttgtatgttttgtaaatgagtGTGTCaggaaagtacattttattatttgtgaaaacTGTATTTGTCATTTACTGTCTTATGTTTAAATACTAGTTTTTACCTGATAAACACAAAGACTCAAAGTGTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155098 lncRNA downstream 61917 9424230 ~ 9432131 (-) True G105019
TU155099 lncRNA downstream 70122 9421089 ~ 9423926 (-) True G105020
TU155100 lncRNA downstream 70925 9421089 ~ 9423123 (-) False G105020
TU155007 lncRNA downstream 99840 9393877 ~ 9394208 (-) True G104976
TU155006 lncRNA downstream 101808 9392033 ~ 9392240 (-) True G104975
TU155148 lncRNA upstream 41957 9539591 ~ 9540814 (-) False LOC122359087
XR_006252683.1 lncRNA upstream 42428 9540062 ~ 9541822 (-) True LOC122359087
TU155150 lncRNA upstream 44682 9542316 ~ 9543148 (-) True G105055
TU155151 lncRNA upstream 44843 9542477 ~ 9543148 (-) False G105055
TU155162 lncRNA upstream 54287 9551921 ~ 9552439 (-) True G105062
XM_043259319.1 mRNA downstream 73478 9419067 ~ 9420570 (-) True or95a1
XM_043259320.1 mRNA downstream 73501 9419067 ~ 9420547 (-) False or95a1
XM_043259313.1 mRNA downstream 79100 9408846 ~ 9414948 (-) False p4ha3
XM_043259312.1 mRNA downstream 79100 9408846 ~ 9414948 (-) False p4ha3
XM_043259311.1 mRNA downstream 79100 9408846 ~ 9414948 (-) True p4ha3
XM_043259238.1 mRNA upstream 33249 9530883 ~ 9535116 (-) True ywhag2
XM_043258232.1 mRNA upstream 62658 9560292 ~ 9565762 (-) True proca1
XM_043259898.1 mRNA upstream 71026 9568660 ~ 9572734 (-) True rab34a
XM_043259899.1 mRNA upstream 71026 9568660 ~ 9572726 (-) False rab34a
XM_043259900.1 mRNA upstream 71026 9568660 ~ 9572718 (-) False rab34a
TU155103 other downstream 57251 9434426 ~ 9436797 (-) True G105022
TU155104 other downstream 57251 9434426 ~ 9436797 (-) False G105022
unassigned_transcript_2147 other downstream 98445 9395530 ~ 9395603 (-) True trnat-agu_65
unassigned_transcript_2146 other downstream 98738 9395237 ~ 9395310 (-) True trnaa-ugc_117
unassigned_transcript_2145 other downstream 98995 9394964 ~ 9395053 (-) True trnar-ucu_51
TU155158 other upstream 55000 9552634 ~ 9555787 (-) True G105059
TU155454 other upstream 266237 9763871 ~ 9796890 (-) True dynll2a
TU155453 other upstream 296114 9793748 ~ 9796890 (-) False dynll2a
unassigned_transcript_2150 other upstream 705693 10203327 ~ 10203413 (-) True trnastop-uca
TU155809 other upstream 1015560 10513194 ~ 10514062 (-) False atf5b

Expression Profile