RNA id: XM_043259899.1


Basic Information

Item Value
RNA id XM_043259899.1
length 2031
RNA type mRNA
GC content 0.43
exon number 10
gene id rab34a
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 9568660 ~ 9572734 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGTCGGTCGAAACCCTGGGGGCTGCAGGGGGCGTTTTCTATCCCTCTTTCCTGGTTTTGTCTGGGGGTTGGAGGAGACGAGCTCGTCTGTACGCACTTCACGGCGCTTCCGTCGGTTTCCTTCAGAAACTTGGAAACTGCAGGCGATGGACGAACACTAAAAGCGCCTCGCACCCCTTTCCGTCTCTTCCTTTCCCTTCATACCACCCTTTCCTCGAAGGCGTCGCGTTTACCGAAACGAGAAGCATCACCATGAGCGTGCTGCCCCCTGTGCGGAAAGACCGCGTGATCGGCCGGCTTCCCAAGTGCTTCAGTAAAGGCGCCGCTCTGAACACAGAGGACGAGTTCCAGGGCAAGGTGAAGACGGCCTGCCAGCAGCAGAGGACGGGAACTGTGGGGTTTAAGATCTCCAAGGTCATTGTAGTGGGCGATCTGGCGGTGGGGAAGACCTGTTTGATCAACAGattttgtaaaGACGTCTTTGACAAAAATTACAAGGCCACCATTGGCGTGGACTTTGAAATGGAGAGGTTTGAAGTTCTCGGGGTCCCTTTTAGCTTACAGCTGTGGGACACTGCGGGACAAGAGAGGTTTAAATGCATTGCCTCTACGTACTACAGAGGAGCTCAAGCTGTAATCATTGTGTTTGATCTGACTGATGTGGCTTCGCTGGAGCATACAAGGCAATGGCTGGAGGACGCAATGAAAGAGAATGATCCTACCAGTGTATTACTCTTCTTGGTTGGCACAAAGAAAGATCTGAGTTCTCCTGCACAGTATACACTGATTGAGCAGGATGCCATTAAACTGGCAGATCAGATGAAAGCAGAGTACTGGGCTGTGTCTGCTTTGTCTGGGGAGAATGTGAGAGAGTTTTTCTTCAGAGTGGCATCTTTAACATTTGAGGCCAATGTTCTGGCAGAACTGGAGAAAAGTGGATCCAGACGTATTGGAGAAGTTGTTCGTAAGTGCATTAAAGATCACCAAAAGTTGCTgaaaaatgtactcaccttcAGACCATCCGAGATGCGGACGGGTTTCGGGGAGCAgcgctcaccagtggatccttcggagtgaatgggtgccgtcggaatgagacacagctgataaaaacatcacagcattatgacggcacccattcactgcagagtagctaatgtaatgctacatttctccaaatctcgttaaattgaacaaaaaaactcaTCTGCATCCCGGATGGCCTGTAGAACAATATACTTTCAgccatatttcattttcattttttcatcgACGTTATTTAATCCACTGGAATTTTATTGcatgatgaaaaaaaaggtaattagattattatttcCCCTGCCTGAATGTGAACTGAatttattaaaagagaaaaatcattACAGAGTCAGACATTATTACATATGAAAAGATAACGAAGCAGTGATTTTCTGTAGAATACGATGCACAGATGAACAATACATAGTTATAAACTTCttatttaatgcaatgaaacttttttttctcctcacagAAATCAACAGCAACTCAAATAACCTGTATGCAACTTCTAAGAAGAAACAGACCAACTGTTGTCAGTAAAGAGCGGTCATGTGAAAATGCAATCGTTTGCACCAGCATATAATGGTACcaaaggaaaacacacacacggatgtACTATGCACGTACGTAGGGAGAGTCTACATGAGAACAGATGCACAATATTTCAACTATGAGACTGTAGAGAGCAgcgttttttatatttatagagtGTAACTGAATATCTGCtgcatgaaagaaaacattCCTTGATGGGAATCCCGTAAAGAGCTCTATGCACAATCATCATCAGTGATTATTATACTGtgctaattaaaagtaatatttttatttggcattttgCTCAGTTTACATTCAGTAGTGATTTTAAAAGCTACACAGGAGTATCACGCACGAGTTGCACAAAAAGCAATAAACAgcgataaatatatttttctatatctATATCCTGTTTATTAAAAGGGTCGTTTTCCTTGAacttttatagatttt

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155162 lncRNA downstream 16221 9551921 ~ 9552439 (-) True G105062
TU155150 lncRNA downstream 25512 9542316 ~ 9543148 (-) True G105055
TU155151 lncRNA downstream 25512 9542477 ~ 9543148 (-) False G105055
XR_006252683.1 lncRNA downstream 26838 9540062 ~ 9541822 (-) True LOC122359087
TU155148 lncRNA downstream 27846 9539591 ~ 9540814 (-) False LOC122359087
TU155445 lncRNA upstream 125790 9698516 ~ 9698735 (-) True G105269
TU155448 lncRNA upstream 132010 9704736 ~ 9705004 (-) True G105272
TU155449 lncRNA upstream 132949 9705675 ~ 9705964 (-) True G105273
TU155456 lncRNA upstream 143283 9716009 ~ 9716310 (-) True G105277
TU155458 lncRNA upstream 147207 9719933 ~ 9738643 (-) False G105278
XM_043258232.1 mRNA downstream 2898 9560292 ~ 9565762 (-) True proca1
XM_043259238.1 mRNA downstream 33544 9530883 ~ 9535116 (-) True ywhag2
XM_043259351.1 mRNA downstream 71026 9494048 ~ 9497634 (-) False rrp8
XM_043259350.1 mRNA downstream 71036 9494048 ~ 9497624 (-) True rrp8
XM_043259320.1 mRNA downstream 148113 9419067 ~ 9420547 (-) False or95a1
XM_043259024.1 mRNA upstream 143973 9716699 ~ 9760170 (-) False synrg
XM_043259017.1 mRNA upstream 143973 9716699 ~ 9760170 (-) True synrg
XM_043259023.1 mRNA upstream 143973 9716699 ~ 9760150 (-) False synrg
XM_043259022.1 mRNA upstream 143973 9716699 ~ 9760150 (-) False synrg
XM_043259019.1 mRNA upstream 143973 9716699 ~ 9760150 (-) False synrg
TU155158 other downstream 12873 9552634 ~ 9555787 (-) True G105059
TU155103 other downstream 131863 9434426 ~ 9436797 (-) True G105022
TU155104 other downstream 131863 9434426 ~ 9436797 (-) False G105022
unassigned_transcript_2147 other downstream 173057 9395530 ~ 9395603 (-) True trnat-agu_65
unassigned_transcript_2146 other downstream 173350 9395237 ~ 9395310 (-) True trnaa-ugc_117
TU155454 other upstream 191145 9763871 ~ 9796890 (-) True dynll2a
TU155453 other upstream 221022 9793748 ~ 9796890 (-) False dynll2a
unassigned_transcript_2150 other upstream 630601 10203327 ~ 10203413 (-) True trnastop-uca
TU155809 other upstream 940468 10513194 ~ 10514062 (-) False atf5b
TU155899 other upstream 1086211 10658937 ~ 10661150 (-) False cryaba

Expression Profile