RNA id: XM_043259017.1


Basic Information

Item Value
RNA id XM_043259017.1
length 5025
RNA type mRNA
GC content 0.52
exon number 24
gene id synrg
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 9716699 ~ 9760170 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGCAGCCGACGGAGTGACCCCGGAAGTTGCGCAGGTCTCTCCTCTCGGGTGACGTCACTTCATTGAGCTGTTTAAGATGGCGCTTCGGCCCGGATCAGGGGGAGGTGGCAGTTTTATGTACCCTGTAGGAGGGGGCATTGGACCACCGCAAGGAATGATGCCCatgcagcagcaacagcagcagggCTTCCCCATGGTCCAGGTCATGCAGCCCAACATGCAAGGCATGATGGGAATGAATTTTGGAGCACAGATGCCTGGTGCCATGCCGATACAGGGTGGGATGGCGATGGGCATGCAGACGCCCGGGATGCAGTTCATGGGTCAGCCTCAGTTCATGGGCATGAGGGGCCCGGGGCCACAGTTCCCTGCGGACCTACAGAAGCAGATGGCGGAGGAGCACCAAAAACGTctggagcagcagcagcggaTGCTGGAGGAGGACCGGAAGAGAAGGCAGTTTGAGGAGCAGAAACAAAAACTACGCCTTCTGAGCAGCGTCAAGCCCAAAACTGGGGAGAAGAGTCGTGACGATGCCTTAGAGGCCATCAAAGGAAATCTAGATGGGTTCAGCAGAGATGCCAAGATGCATCCAACACCATCTTCACAGTCTAAGAAACCAGACTCATCGCCATCTCATTCCTCTGTCACCTCTCATACCCTTCCTCCTGCTTTCCCCGATGACGACGATGAGTTTAGTGACTTTGTGCAGGGCCCCGTCGatgcctcctcctcctcattcCCCCCTTCATCCCTCCCTCCGTCCTCCCCTTCGCTGAGAGCCGCTCACATTAGCCAGCCATTAGACACGGGGCCTGGCCAGCACCCCCCTTCCTCCCCTCTCCCTCACTCTGTCCCTTCATCTCTCCCTGTCTCACCTGCCATCCAACACTCTTCTGTCATCTCCAGCTCCCAATCTGCATTTCAAGGCCCATCTCTAGAGGAGAAGATGTTCACATCTTGCGATTTGACAGCTGATAAGAAGGCCCAGATTAGTTTTAGGCCACGCCAGGCTCTCTCTGAGCTAAATCCCAGAGTTCAGGCCACGGCACAGTTCCACAGCAGCACCAGAGCCCGAAACTGGGCCCAAACTCAAGATGACTTCAAATCAGCCTTCATCATAGAGACGGCACCAGAGCCTCTACCTGCTACTCAGGCACCCCCTGCAGCAGACAACCCACCCATCCAGCCCACTAGCACCAGTGGTGTGGGTGTCTACCCCCAACAAGACATGCAACCTATGGTGCCGGCCTGGTTGTACAACGACTCGCTCATCCCAGAGTTGTTTAAGAAGGTCCTTGAGTTCACCATGACACCAACAGGTATTGACACAGCCAAACTCTACCCAATTCTGATCTCATCGGGTCTGCCACGGGAAGCTCTCGGACAAATCTGGGCCTTGGCCAACCGCACCACACCTGGAAAGCTGACTAAGGAAGAGCTGTACACTGTCCTGGCCTTGATTGGAGTTGCCCAGAGTGGTCTAACAGTCATGAGTTTGGACATCCTGAGTCAGTTCCCCTCTCCGCCTGTGCCCAATCTACCCACCATGGCTATGGCTATTCCTGCTGTCCTGCCTCAGCACCAGCAGCCCATCATGACTCAGCCACCCGTGTCCATGGCAATGCCGGTCGCCGCGCCTCCTGTCATGAGCATGACCCCAAACCCCCCTGCACAACCACCGGCCAGCTTCATCACCAACTTCCCTCCTGTTCAGGCTGCCAAGGCTGATGATGACGATTTCCAGGACTTCCAGGAAGCTCCCAAAGCCGGCGCTGGAGATGATTCATTCACAGATTTCCAAGGAGAAACAGGAGGAGCGTTTCCCAGTATGACATCATCATCCCAAAGCGGTGTTCCTGCCATGCTAACTCCAGTGTCAGggtcttcatcctcctcctcctctgatAAATACGCAGTGTTTAAACAGTTGTCAGTGGAGCAGCCTGCAGAGCCCACAGCTCCTGTCtcagATTCAGGGGACAAATACAGTGTTTTCCGAGAGCTTGAGCAGCCTTCAGACAGAAAACCAGTTGGGGAGGGATTTGCTGATTTCAAGTCTGTCAGTGCCGACGATGGCTTCACAGACTTTAAAACAGCCGACACCGTCTCTCCATTAGACCCACCAGACCAGGCCAAGTTCCAGCCAacttttcctcctcctttctctTCTTCTCAATCTCTGTCCCATTCACAGCCAGCCTCTCTGGCTCAACCCAGAAATCCTCTCAACATGGCAGACCTGGACCTCTTCACAACAATGGCTCCTTCTGCTCCCACCGCCACGGTTGACTCCAAACTCAACCTGTTCCCTTCAGCGCCACCATCCCTGGTATTGCACTCAGCTGCGAAACCTCCCAGCGCAGGGGGTGATGACTTTGGTGATTTTGCACTCTTTGGCTCCTCGGCGTCCTCTGAAGTACCTCCCACCACCTCCGCAGTAGGGAGAGGAACTGGGGTGATGGTTCAGGACGATTTTGCTGACTTCATGGCGTTTGGGAGCTCTAGAGATCAGAGAAACGAGACTAGCACTGGAGAGGGTTCTGGAGAGGCCCAGGCGGAGACGTCCCAGCCGAGGCAGCAAATCAGCACTGATAAGTATGACGTCTTCAAGCAGCTTTCCCTGGAAGGTGGCCTGGCTTACGACGATAACAAAGAAAGCGGCGGGGGGTCCTTCTCATCGCTCAAGAGCGACAATGACGACTTTGCAGATTTCCAGTCCTCCAAATTCTGTACGGCGCTGGGCGCGTCTGACAAGAGTCTGGTGGACAAAGTGGCCGCCTTCAAGCAGGCCAAAGAGGACTCTGCCTCCGTGAAATCCCTGGACCTCCCGTCCATTGGGGGCAGCAGCGTGGGGAAAGAGGATTCGGAGGATGCGCTCTCAGTACAGCTAGACATGAAGTTGTCGGACATGGGTGGAGACCTGAAGCATGTGATGTCTGATAGCTCCCTAGATCTCCCTGGTTTGTCGTCACATCAACCCCCAGCTGCAGAGTCTGATGAATTAAAATTTGACCCCTTTGGCACATCCGCCGTCAGCAGTCTTGGCAGCTACGACTGGTCGGACAAGGAAGATCTCTCGTCTGGTCATGGTAAGAAGCTCCAGGGAGGACTGCCGTCTTCAGCTGTTGTCCAGAGGAAAGAGACGTCTTTCGGGAGCTCAGAGAACATTACCCACACCACAGTTGCCAAGGTGACCACATTCCCAATCGAAGACGGTGGCTCTACCAGCGAAAGCAGATTTGAAGCCTTCGCTGACTTTGGCTCCATTGAGCAGCCCGGTCAAGATGACGATGATGACTTTGGAGACTTCGCCAGCACGGTTTCTGAGAAATCTGACTCCCCTCCTGGAACCACAGAAGCAGAGGGCAACCAGGGTGAACTGACAGATGAGTTTGGAGCCTTCCAAGGTGACAAGCCCAAATTTGGCAAGTCAGACTTCTTGAAAGCCAGCACGCAGGCCAAAGTGAAATCCAGCGAAGAGATGATCAAGAACGAGCTCGCCACCTTTGACTTGTCTGTGCAGGGATCCCATAAGCGCAGCCACAGTCTGGGAGAGAAAGAAATCGTACGGTCCATCCCCTCTCCTGCCCCTGAGCAGCCCTTCAGAGACCGATCCAACACCCTAAATGAAAAACCTGCGCTGCCGATCATCCGCGACAAATACAAGGACCTCACAGGAGAGGTGGAGGAGAGTGAGCGATATGCGTACGAATGGCAGAGGTGTTTGGAGAGCGCTCTGCAGgtCATCACTACTGCCAATAACACCCTTAATGGCATCAGCAGCTCCACAGTGTGCACGGAGGTCATCCAATCAGCACAGGGGATGGAGTACCTGCTGGGTGTGGTGGAGGTGTATCGTGTGACCAAGCGCGTGGAGCTGGGGATAAAAGCCACGGCCGTTTGTTCAGAGAAACTACAGGAGCTGCTTAAAGACATCAGCCGCGTGTGGAACAACCTGATGGGCTTCATGTCGCTGGCAAACCTCACTccTGATGAGAGCTCACTGGACTTCTCCTCTTGTATATTGAGGCACGGCATTAAGAATGCCAAAGAGCTGGCGTGTGGAGTGTGTCTGCTCAACGTGGACTCGCGCAGCAAGAAAAAAGGCGAGAACACTTTCGGACGCCTGTTTAAAAGAGCACTGCCAAAAGACAGTCGCTCCAAATTAAGGGCCTTTAATTCGGAGACGGACAACTTCAAGCTGATGTACGGAGGTCACCAGTACCACGCCAGCTGTGCTAACTTCTGGATTAACTGCGTGGAACCCAAACCTCCGGGTCTCATCCTGCCCGACCTGCTCTAGAACCCAGCACTGAAGCATCACTTTAGCTGTTCATCGCTGTTTGTCTTTGAACGGTACAGCTCTCATCACTTGAATTTGGGACGCAGCTGTCTAGATCTGCCATTGTCTGTTGGAAGATCAGGTAAACGATGTACTACTgaataatagtttatttaaatattgtaaatgtgtCTTTGTCTACTTTTTTGGATCTGCTTCTCTTCAGCACAAAAGTGCTTGGGTTGATTCTTTGCTGTTGATTTCTCTGCCATGTGAAGTACATACTATTCTGCATGTTACGAATAGCGGACGCGTAGCTATTACATAAACCTTTGAAAGCATCAGGAAGCGCGGCAGATATTACTTAGACGTGACAAACATCGGTATCTTCTTTTCTGTCATTGCTTTCTTTACGGTTGTGCTGGAACACAAGTCACTTTTGTAGTGGGTCTGGAAATGCTTGCGATTTTTCTGAGAATCTTTTATAAAGCCTGGAAGATGTTCTTAAACGCTGTGATATTCGGATGTGACACTTTCGAAGGACTTTGTTGTGTGAAACTTTTTGAAGGAAATTCAAAAAGTCTGGGGATGTAAGAAGTGCAAAGTGAAGCCTTTTCCCTTTTTCCGACCCACGCTGTCATAAGAGTGTTGTAAACTTccattatgaattaatttcttTGCATTGATGCTCTCGTAACGAATCAACAAGAATACAACCGAGATTAAACGGCTTTGTGTA

Function

GO: NA

KEGG:

id description
K25219 SYNRG; synergin gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155456 lncRNA downstream 389 9716009 ~ 9716310 (-) True G105277
TU155449 lncRNA downstream 10735 9705675 ~ 9705964 (-) True G105273
TU155448 lncRNA downstream 11695 9704736 ~ 9705004 (-) True G105272
TU155445 lncRNA downstream 17964 9698516 ~ 9698735 (-) True G105269
TU155162 lncRNA downstream 164260 9551921 ~ 9552439 (-) True G105062
XR_006252698.1 lncRNA upstream 20562 9780732 ~ 9791175 (-) True LOC122359357
TU155526 lncRNA upstream 326662 10086832 ~ 10093990 (-) True G105321
TU155535 lncRNA upstream 352615 10112785 ~ 10113020 (-) True G105329
TU155556 lncRNA upstream 413308 10173478 ~ 10175599 (-) True G105339
TU155585 lncRNA upstream 483778 10243948 ~ 10249609 (-) True G105361
XM_043259898.1 mRNA downstream 143965 9568660 ~ 9572734 (-) True rab34a
XM_043259899.1 mRNA downstream 143973 9568660 ~ 9572726 (-) False rab34a
XM_043259900.1 mRNA downstream 143981 9568660 ~ 9572718 (-) False rab34a
XM_043259901.1 mRNA downstream 143985 9568660 ~ 9572714 (-) False rab34a
XM_043258232.1 mRNA downstream 150937 9560292 ~ 9565762 (-) True proca1
XM_043259802.1 mRNA upstream 5056 9765226 ~ 9777685 (-) False hnf1ba
XM_043259803.1 mRNA upstream 5056 9765226 ~ 9777677 (-) False hnf1ba
XM_043259804.1 mRNA upstream 5056 9765226 ~ 9776935 (-) True hnf1ba
XM_043258963.1 mRNA upstream 33572 9793742 ~ 9796923 (-) False dynll2a
XM_043258962.1 mRNA upstream 37848 9798018 ~ 9801553 (-) True srsf1a
TU155158 other downstream 160912 9552634 ~ 9555787 (-) True G105059
TU155103 other downstream 279902 9434426 ~ 9436797 (-) True G105022
TU155104 other downstream 279902 9434426 ~ 9436797 (-) False G105022
unassigned_transcript_2147 other downstream 321096 9395530 ~ 9395603 (-) True trnat-agu_65
unassigned_transcript_2146 other downstream 321389 9395237 ~ 9395310 (-) True trnaa-ugc_117
TU155454 other upstream 3701 9763871 ~ 9796890 (-) True dynll2a
TU155453 other upstream 33578 9793748 ~ 9796890 (-) False dynll2a
unassigned_transcript_2150 other upstream 443157 10203327 ~ 10203413 (-) True trnastop-uca
TU155809 other upstream 753024 10513194 ~ 10514062 (-) False atf5b
TU155899 other upstream 898767 10658937 ~ 10661150 (-) False cryaba

Expression Profile