RNA id: TU155456


Basic Information

Item Value
RNA id TU155456
length 302
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G105277
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 9716009 ~ 9716310 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCATGATTTAGTCCCCCATCTGTATGTGGAGAAGACGAGTTACTTCTGTTAGATCAACTTTTCCACGCTGTTGCTCATTCTCATCAAACCAAGCCTGTTGGAAATGTACAGGTGAaagtaaaaagtttaaaatctgGATTTGAGTCAACTTACACCGGCTTGCAATTCTGATGCTGTTTTGACAGGCTGTTAGAGTGGATAATGTTTCGTGTTTGTCTTTACACACACGTGACTAACAACCTTTATCCACCTTGGCGTCGCTCAACAGCGGGGATTAGATTTGCAGGGACTTCCTGTTCCG

Function

GO:

id name namespace
GO:0004175 endopeptidase activity molecular_function
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155449 lncRNA downstream 10045 9705675 ~ 9705964 (-) True G105273
TU155448 lncRNA downstream 11005 9704736 ~ 9705004 (-) True G105272
TU155445 lncRNA downstream 17274 9698516 ~ 9698735 (-) True G105269
TU155162 lncRNA downstream 163570 9551921 ~ 9552439 (-) True G105062
TU155150 lncRNA downstream 172861 9542316 ~ 9543148 (-) True G105055
TU155458 lncRNA upstream 3623 9719933 ~ 9738643 (-) False G105278
TU155457 lncRNA upstream 17636 9733946 ~ 9738643 (-) True G105278
TU155459 lncRNA upstream 33526 9749836 ~ 9750489 (-) True G105279
XR_006252698.1 lncRNA upstream 64422 9780732 ~ 9791175 (-) True LOC122359357
TU155526 lncRNA upstream 370522 10086832 ~ 10093990 (-) True G105321
XM_043259898.1 mRNA downstream 143275 9568660 ~ 9572734 (-) True rab34a
XM_043259899.1 mRNA downstream 143283 9568660 ~ 9572726 (-) False rab34a
XM_043259900.1 mRNA downstream 143291 9568660 ~ 9572718 (-) False rab34a
XM_043259901.1 mRNA downstream 143295 9568660 ~ 9572714 (-) False rab34a
XM_043258232.1 mRNA downstream 150247 9560292 ~ 9565762 (-) True proca1
XM_043259024.1 mRNA upstream 389 9716699 ~ 9760170 (-) False synrg
XM_043259017.1 mRNA upstream 389 9716699 ~ 9760170 (-) True synrg
XM_043259023.1 mRNA upstream 389 9716699 ~ 9760150 (-) False synrg
XM_043259022.1 mRNA upstream 389 9716699 ~ 9760150 (-) False synrg
XM_043259019.1 mRNA upstream 389 9716699 ~ 9760150 (-) False synrg
TU155158 other downstream 160222 9552634 ~ 9555787 (-) True G105059
TU155103 other downstream 279212 9434426 ~ 9436797 (-) True G105022
TU155104 other downstream 279212 9434426 ~ 9436797 (-) False G105022
unassigned_transcript_2147 other downstream 320406 9395530 ~ 9395603 (-) True trnat-agu_65
unassigned_transcript_2146 other downstream 320699 9395237 ~ 9395310 (-) True trnaa-ugc_117
TU155454 other upstream 47561 9763871 ~ 9796890 (-) True dynll2a
TU155453 other upstream 77438 9793748 ~ 9796890 (-) False dynll2a
unassigned_transcript_2150 other upstream 487017 10203327 ~ 10203413 (-) True trnastop-uca
TU155809 other upstream 796884 10513194 ~ 10514062 (-) False atf5b
TU155899 other upstream 942627 10658937 ~ 10661150 (-) False cryaba

Expression Profile