RNA id: TU155458


Basic Information

Item Value
RNA id TU155458
length 4266
lncRNA type sense_over
GC content 0.35
exon number 4
gene id G105278
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 9719933 ~ 9738643 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaggtcttatgggtttaaaacaacttcagggtgagtaattaatgacagaatttttaggTGTGATTTTAATCAGATTTTCCATTATGCTTTTTCAGTCCAAGTTTGTAGAATATCTGAATTCATAATTTGATCAAATTGATTTGACTCAGATGTAccaagaaatgtatttttggtgcAAAGCTGAACTTCATAATAATCACATTTGActtaaaaatgttcacattCAAAGCTGAGATTAGAAGATTATGAgaacactaaaatatttttgctcaaaTGGCATTGTTCATTTAGATTCTGCCAGCACGACACATTCTAACTTTACATTCGTTCAGATTTTTGACTCCGAGCCATTTTGCGCTCATCAGAATTACAGATGGGATATATATAAGCAGCCAGATTAATATGCTAATGGTGCTGAGGTCTTGGCTGTTTTTCCAGATTGTCTAAGCATGATAAATGATCTTGACATTTATGTCCTTTATTTGATCTACAATTCCACCTTCACATCAAGTCCTAAAACGGCCTCTCTTGATATAGCCAACAGGTGTTGTAGTTAATATCGTTCTGGTCACACTTGTTTTGCATGTAACCGTTCATCCGTTCATGTGATGGTTATCCGTGTTGCATGTGCATGGAGAATCCTCAATGCCGTGCCTCAGTGCATACATGagcaaaaaatacaaagcaCTACCTTATCTAACTCGAGTCAtatcacacacacgcatgaaCCGGCTGCCCTGTACTTGAGCTGCATACTACAGGCATCAGATGCCAGTCCATGCTGAGAAATCTAAGAGCATATTGGGACGCCAAGTTAGTGACATCTTCTCCTTTAGAGGATTCAGCGACAATTAACTCTCGATTGGCCTGTTTGTAATTGACTGTCTTTTCCAGACGTCAGTCACCTTTTAAATTTACACTCATTCTCTGCTTCTCATGTTATCTATTTTGCATGAAAGCATCcccaaaatgtgtgtgtgcgtgcgtgcttGTGTTCATGTTGTCATTCATATTCATCACATATCAGGGTGAGAACACAGTCACAGTATTTCATTCAGTCAGCGTCAGCCATCGTATCAGCCCTCGTGTGTGTAGACTGGTTGGCATTGAGGAAGCACAGTAGGAAGAGTTTCCATAAACTTGTGTGGTCTCACCAGCAACCAGAGCTGTTGCTACTGTCATGTATTGTCAGAATAGCCACAAGTTTCTTActaataattacacattttgactagtaaaaagcatttgatttaaatttccAATTTGGTAAAACAAGGTTGACTTGATGCTTTTGTGGGACTTGTCATGTTAAGTTggacatttaatgaaattaatggTTAAAAACATGTAAAGCCTCTCAATCTTGGCTGTTGTACCATTATttgaaaacaactgaaatgGCTGCAGATTTAATTGTTGATGCCATATTTAGCTGTGATGTGAATGAAACAAGGTTGTGAGGGATTGAATATCAATATATTGTGTTCtctaatagatatatatatatataaccaaacATTTGATGGTAACCATtaacttccatagtattttctATGGCtatcatcaaaatatctttttgtgcTCAACAAAGGAAAGAGATTCATTTAGTTTTGGAACAActgatgatgacagaattaaaagtTTTGGATGAACTGTACCTTTAACGTCAGTCTtgagaaatgttaatttaataacactgtaaaatcttaaaaattaattgaCTCTGTACCTCCTCATTTTTTCAtgcataattttgttttatttttattatataatataaaattgtttttaatttttattaaatataaaagtttattattggctattaattttattataagggtttttccaccccaaaatgaaaccTTTGTCTTCATTTAGACCCTTGTTCAATTCCAATcttttatcttcagaacacacattatatttttggatgaaatctgagagctctctgacccttcatagacagcaatggAATTAACGCTATCAACCGGTAAAATAATCCACGTGACATCAGTTGGTCAACTATAATTTTCccgaagctatgagaatactttgtaagcaaatgcaacaaaaataagGATTTTATAGTTATAGCTTCCTAAAATTATGCTTGAACCCCAGATATCACATGGATTATATTAACCATTTCTTGACATGGATCGCGTTGTTTCCATTGCTGTCTGTGGGAGGATCAGAGAGCCATCAGACATAtttcatacatgtatataaaatttagttttctgaagatgaacaaagttcTTATAcggttttggaacaacatatgagttttcattttggggttgaGTAACCcttgaactttttttgtgtCGGCATGTGTCAGTAGACCGTTTATCATATCATAACTTCCCTTTTATATTTCGCAAACCTTGTTTTAAGACACATTCGTCTTCTCCACTTTTCACTCTCATTCTCTGAAAGTTCAGCAAccagatataaaaaaacaacatgaatgaACTGTAATTGTGTCCCTCACAGTCTCCTTTTCATTTAGGTCATGCTAAACATGGCATCCGCTCCGATTGATGTCTGTAGGAATCCTTTTGCCTTCTTTCCATAGTAGCTTCAATGAATACTAACATTACCTAAACCTTGTCAAACACTGTTCTAGTTACATCTTATACAAATTCTTCTAATTCAGTTACTGGATACCTCTAGAGCTCAAGCATAAATATTGTAGCAGGTTGAGAGTGTTGGGTTTCCAAACACTTGCACTACGCCCCTGGATCTGTAGCTAACCACCCTagagtatctttttttttttcccccaggaCAGAGCCGCTTCTTGTGGTACTTCCACGAGAAGGTGACTTTGTTTCAGGTTTGTCGTGGGTACATTTGCTCTTGTAGACCACACTGACGGTGGAGCTCTATCTAACTTTGCTTTTCTATGCTCCAGTATGTGCCAGCCTTCAATTTGTGAAATTGACAAGTATTTACACGCAGTAAACAATTAGTAGGATTAGTCCATGCTTCTGGCATACTTACAAAATAGGTTGTTTTTATCAAGAATggaaatgtatacatgcaaatttaatagtgtatttttattacaggaAAATAAactcttatttattttgaatatagaTAGACTCGATTAGTACTGCTGATTGTGTTGACGCATTTATGCCAGAAAgcgtattatttgtatttatgaacAGCATACTGCTTGCCGTGTTATGAAATTGTTACTCTTTTGACTTATGTGGGTCAAAAATACACCAACCGAGAAGTACAGGATGGCGAGAGAAAAAGGGTACAATCTCTTTTTGTCGTTCTTTACCTGTCACTCAAATCAATAAATGCTCCAGGATAgatttctctgttttcttttaacCCTTTGAGCACCTAACGGACTGATGCAAACCCTAGAAGAATTGAAGTAGGCTGCACAATTATAACAAAAATCAACCTTTTTCCCTAATACTGAGATTGcgtttttcaatttttattggtaaaattgaataattattttgtgtggGGAAACTGCATGTCATATAAGAACTGTTTGCTTAAATGTATTACACGTACTTTAAATTGTTACATCTgttcaatttaataaatgtagtaatatttgatcgattaattgcaatttaactTAGTTGCATCATTTGTTTGCAGTGTATTTCCTGACTAATTCCATCTGTGATTGGTCTCAATGTTTAGTGATAGTAGACCCAAATTAACacttcagttaatgtttattcatacttttttggactaattgtgcagccctagtTTTGTTGAGCTATCGGTCGGCttgcaaatatattaaaatcaagaATAAGTCTCTCCAGGTTCTTAAAGGGTTTTAATAAGCTGCATAAAACCAATATTAGCATCACCTTGGTCTTTGCTTAAATGTTCTGTATCACTTTTCCTTATTTTCTGGttgctttttcctttttatagtCCAACTACAATGTGTCTTTGACCAATGAGAACTAATCTAATCTTAATCTGTGAATGTGCCTTCTCAATGCTGGGTTCTGCGTCTGGATTTGGgattttctgtcctgtttttgttttcttctcatttctgctttttctgaCTTTGCATGCCCTTGTattcttaaaatgcaaaaaaacaacaaaacaaaacaaaaacactttttaactgTTAGTTTGGCAAGACTATTGTAACAAGATCTTTCATGGAATTTtgtgacctctctctctctctctctctctctgccaatGTTGTcgtaataaatatgaataatggTACAaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155456 lncRNA downstream 3623 9716009 ~ 9716310 (-) True G105277
TU155449 lncRNA downstream 13969 9705675 ~ 9705964 (-) True G105273
TU155448 lncRNA downstream 14929 9704736 ~ 9705004 (-) True G105272
TU155445 lncRNA downstream 21198 9698516 ~ 9698735 (-) True G105269
TU155162 lncRNA downstream 167494 9551921 ~ 9552439 (-) True G105062
TU155459 lncRNA upstream 11193 9749836 ~ 9750489 (-) True G105279
XR_006252698.1 lncRNA upstream 42089 9780732 ~ 9791175 (-) True LOC122359357
TU155526 lncRNA upstream 348189 10086832 ~ 10093990 (-) True G105321
TU155535 lncRNA upstream 374142 10112785 ~ 10113020 (-) True G105329
TU155556 lncRNA upstream 434835 10173478 ~ 10175599 (-) True G105339
XM_043259898.1 mRNA downstream 147199 9568660 ~ 9572734 (-) True rab34a
XM_043259899.1 mRNA downstream 147207 9568660 ~ 9572726 (-) False rab34a
XM_043259900.1 mRNA downstream 147215 9568660 ~ 9572718 (-) False rab34a
XM_043259901.1 mRNA downstream 147219 9568660 ~ 9572714 (-) False rab34a
XM_043258232.1 mRNA downstream 154171 9560292 ~ 9565762 (-) True proca1
XM_043259802.1 mRNA upstream 26583 9765226 ~ 9777685 (-) False hnf1ba
XM_043259803.1 mRNA upstream 26583 9765226 ~ 9777677 (-) False hnf1ba
XM_043259804.1 mRNA upstream 26583 9765226 ~ 9776935 (-) True hnf1ba
XM_043258963.1 mRNA upstream 55099 9793742 ~ 9796923 (-) False dynll2a
XM_043258962.1 mRNA upstream 59375 9798018 ~ 9801553 (-) True srsf1a
TU155158 other downstream 164146 9552634 ~ 9555787 (-) True G105059
TU155103 other downstream 283136 9434426 ~ 9436797 (-) True G105022
TU155104 other downstream 283136 9434426 ~ 9436797 (-) False G105022
unassigned_transcript_2147 other downstream 324330 9395530 ~ 9395603 (-) True trnat-agu_65
unassigned_transcript_2146 other downstream 324623 9395237 ~ 9395310 (-) True trnaa-ugc_117
TU155454 other upstream 25228 9763871 ~ 9796890 (-) True dynll2a
TU155453 other upstream 55105 9793748 ~ 9796890 (-) False dynll2a
unassigned_transcript_2150 other upstream 464684 10203327 ~ 10203413 (-) True trnastop-uca
TU155809 other upstream 774551 10513194 ~ 10514062 (-) False atf5b
TU155899 other upstream 920294 10658937 ~ 10661150 (-) False cryaba

Expression Profile