RNA id: XM_043258962.1


Basic Information

Item Value
RNA id XM_043258962.1
length 2066
RNA type mRNA
GC content 0.47
exon number 5
gene id srsf1a
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 9798018 ~ 9801553 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAcccatataatatatttttattgttttacaccTCACTTTCCGAACTATGTAGCGTCGCGGATGTAGCTACTCCATTGCTCTCCCCCTCAGCCTGTTTGCCCAGATTCATCCGCGGTGTGTAAAGCGCGCTTGAAGAGGACGAGTCCCGCGCTTCTCGAGCGGAAACACGCTTTCGTCGTGCGCGTGCAAGCGGCGCTTCAAACAATAGAAGGTGAAGGTTTATCGGCGCAGATATGTCTGGTGGTGTGATCCGCGGCCCTGCTGGAAACAACGACTGCCGCATCTATGTCGGGAATCTGCCGCCTGATATCCGCACGAAAGATGTCGAAGATGTGTTTTATAAGTACGGAGCCATTCGAGACATCGATCTGAAAAACCGACGAGGCGGACCTCCATTCGCCTTTGTCGAGTTTGAAGACCCAAGAGATGCAGAAGATGCCGTCTATGCCCGCGATGGGTATGATTATGATGGCTATCGTCTTCGGGTGGAGTTTCCCAGGAGCGGGAGAGGAGGTTTTGGCGGTGGTGGCGGCGGcggaggaggtggtggtggaggCGGCGGGGCTCCTAGGGGCAGATATGGACCCCCCTCCAGACGTTCAGAGTACAGAGTGATCGTATCGGGGCTTCCACCGAGTGGCAGCTGGCAGGATCTGAAGGATCACATGCGCGAAGCAGGTGATGTATGTTATGCTGACGTTTTCCGAGATGGAACTGGGGTGGTGGAGTTTGTTCGCAAAGAAGACATGACCTACGCTGTTCGCAAACTGGATAACACAAAATTCCGGTCGCATGAGGGAGAAACCGCGTACATCCGTGTGAGGGTGGACGGCCCCCGCAGTCCGAGCTATGGACGATCAAGATCAAGGAGCCGCAGTCGCAGCAGGAGTCGCAGCCGCAGCAACAACCGTAGCCGAAGCTACTCCCCGCGCCGCAGCCGAGGATCCCCGCAGTACTCCCCGCGTCATAGCCGCTCCCGCTCTCGCTCCTAAACATGCCCCCTCGGAGCCCTTGAGCCATGTTTTTATAGTCTTTACACAAACCCCATGTTTTAATTCCACCTTTCTTGTTTCATGAGACACTGatcttatgtttttttgttttttctccctgcaatggttatttttaaatacgcATTTTTatccccttttttttctttcatagaCCAAACGAAGGGTTATGTAATGGCTcccaatatttttgtaaatgccaTGTATGAGTTATTCATGGGTTAGTGGGTTTCTCAATTGTTTTATGCTGTCTTCCTCTAGACGTGACACAGAACTGATGCTTTGTAATAAAGGATTGCTAAATCTAATCTGTTGCGTAAAATGGTGAATTTGACCTCTAGAACAAACCTCTATTGCATCAAAAACAGACTTGTTGGTACTTGGAGTAACTGAACCAATTTTACATCCCTTTCAAAAGATGTATCTTTAGCTGCGTTGTACTCAAACGTCTAGCTGGGTTTTTGTGTCCAAAGACAGATTGCAGCTTTCATGTTTGATTCAGTCTTAGTATTAGGTTATTAGTTTTAACGGTCTGTCTTGGCCTTAATGCTGCATGCATGCATCAAAGGCGGGTTTGAGTGGATTTGATTCTAACTCTTTGCCTCCTTGTTTTGATTTTGCTGGTATCTTAAGGTTTGGATTGGAGGAGAGGCTCAGTGGATGCCGGATCACTGGGATCAGTACATAATGAAGATAGGATAGGGAATGCTGGATACATGGAACAGGATCAATTGCTCCCAGGAtcataggatttttttttttttaaggctgcAATTCAAAAGTGCTTACCTGCCCTTTTATTATAACTCTggaaaatgtagattttttttttttttttaacattggtGGAGCAGATGCTGGAGCAGTCTTTTGGGGATGGAATCGACAGGAACAGTATGGTAAACTGAAAGTGCATTTGGGATGAGGGGGGGGTTTACTcaggcatttttagatttacacTGTCCCAATATGGATGGTAGATGCTTTAACATCGCTAgcatttagtttctttttagtAAAGTTTTTGCCTAAATAAAGATTTCATTGGTACAAAA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12890 SRSF1, SFRS1, ASF, SF2; serine/arginine-rich splicing factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252698.1 lncRNA downstream 6843 9780732 ~ 9791175 (-) True LOC122359357
TU155459 lncRNA downstream 47529 9749836 ~ 9750489 (-) True G105279
TU155458 lncRNA downstream 59375 9719933 ~ 9738643 (-) False G105278
TU155457 lncRNA downstream 59375 9733946 ~ 9738643 (-) True G105278
TU155456 lncRNA downstream 81708 9716009 ~ 9716310 (-) True G105277
TU155526 lncRNA upstream 285279 10086832 ~ 10093990 (-) True G105321
TU155535 lncRNA upstream 311232 10112785 ~ 10113020 (-) True G105329
TU155556 lncRNA upstream 371925 10173478 ~ 10175599 (-) True G105339
TU155585 lncRNA upstream 442395 10243948 ~ 10249609 (-) True G105361
TU155586 lncRNA upstream 443911 10245464 ~ 10251995 (-) True G105362
XM_043258963.1 mRNA downstream 1095 9793742 ~ 9796923 (-) False dynll2a
XM_043259802.1 mRNA downstream 20333 9765226 ~ 9777685 (-) False hnf1ba
XM_043259803.1 mRNA downstream 20341 9765226 ~ 9777677 (-) False hnf1ba
XM_043259804.1 mRNA downstream 21083 9765226 ~ 9776935 (-) True hnf1ba
XM_043259019.1 mRNA downstream 37868 9716699 ~ 9760150 (-) False synrg
XM_043258279.1 mRNA upstream 338 9801891 ~ 9805862 (-) True aldoca
XM_043258276.1 mRNA upstream 6108 9807661 ~ 9816653 (-) True rskra
XM_043258923.1 mRNA upstream 15569 9817122 ~ 9839614 (-) False LOC122358935
XM_043258922.1 mRNA upstream 15569 9817122 ~ 9839614 (-) False LOC122358935
XM_043258921.1 mRNA upstream 15569 9817122 ~ 9839614 (-) True LOC122358935
TU155454 other downstream 1128 9763871 ~ 9796890 (-) True dynll2a
TU155453 other downstream 1128 9793748 ~ 9796890 (-) False dynll2a
TU155158 other downstream 242231 9552634 ~ 9555787 (-) True G105059
TU155103 other downstream 361221 9434426 ~ 9436797 (-) True G105022
TU155104 other downstream 361221 9434426 ~ 9436797 (-) False G105022
unassigned_transcript_2150 other upstream 401774 10203327 ~ 10203413 (-) True trnastop-uca
TU155809 other upstream 711641 10513194 ~ 10514062 (-) False atf5b
TU155899 other upstream 857384 10658937 ~ 10661150 (-) False cryaba
TU156055 other upstream 1284266 11085819 ~ 11092713 (-) False igsf9ba
TU156117 other upstream 1501868 11303421 ~ 11304562 (-) False LOC122358622

Expression Profile