RNA id: TU155100


Basic Information

Item Value
RNA id TU155100
length 2035
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G105020
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 9421089 ~ 9423926 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGAGACTGATATACCGAATACCACAAAGTCCGTAAATTACAATCGCataacttttctttctttaaaaatgtaaaaactaacgGCGTCTTCGGCGCTGCACCTTTTGTGGGtcgatgttttttttccaaacctaCTTATTGACATCATTCTAACTGACCGGTTCTGTGCGGTGGAGGTATAACACAGGAGATTAatcagagtaaaaaaaacattaaataaacatttgttttggaaCTGGGTTCGGTGCAAAGGGATCAGGCAGCTTCTCCTCATCTATTTAGGTGGGTTGCATCATTGCCAAACAATTAGGTAAAACAAATGACACTGACATACAAACATGTGGTTTACCACTCATGGCCTTCTTAACAACCTCTAAAGCACATAATTAGTCACATAGGATTTGACTCTGGGAAGATTTAGTCAACTGTTTTCAGTGATATAGAATGGACGATCTGTACATATacagcatatacagtatatcatatacatatacatatagtgTACAAATACTTATGTGGGCTGCATCATTGGCAAACAATATAAGGAAGCATAAATTACGCTGATATGTAAAATTGTGGTTTATCACTAATGGCCATCTTGACGATCCTTAAAACACATATTAGtcacaaggaaaaaaaaattgcaaaaattgtacattaaaatacattcaatatcaaaataacaataactgtAGCTCTATACTGatgtttaaaagcattacagttgattaacatgaaaacacatacgctaaaataactaaaatgatctttaaaagATATAATACCCGAGCAAGTTTGACATCATTCCAGCCAATTAAATAGCTGGAGAGCAGCAGCGATTCTTGTTGTTGATCTAAACCACGCAGGCAGGGATATGCAGACTTTTAACCACCCCTTTAAGTGATCCAGAATATCTTGTTTATCATAAAGCTTGTTGTTTGATCTTTGCTGCTCAATGTTTCCCCTTTCCCTGCGTTTTTAAGGTCAGTGCACTTCAGAAAACAAGCGGTTGTGAGCTACGTGTCTCACTGCCCTTACGAGTGACACATATGACACCGCAGATCGAGCTGCCAATGCACTTTCGTCTCTAAGTACAACTTTTTCTGCTCCACCGCAGAACaaacaaaatggtaaaataaggCAGAGCATGACAGTTCACAGTCAATAATTGATAGCTCTGTTAATGACTAGCCATAAGAAACATTCTCAATATGCTTATCTAGCAGTGAATATTTAGTGACTTATATAACAGTTTAGTTGGAAAGGAAAGAAACATACTTtgcaacaaaattaatttattaaatgcaacagtgcgtataattgatatataacataacttatttaataaatgtgatcctggaccacaaaaccatgagggccattttttttttaaattgagatttatacgtcatctgaaagctgaataaataagctattCATTGACGTATGATTTACGTAGAATATTTGgctgattttaatatttgaatccgagggagcaaaaaaaaaatgtaatactgagaaaataacatttaaggatggccaaatgaagtccttatcaatgcatattactaatcaatttctttacatctttacataataataaagttctttacatatcctaatgatatttggcattaaagaaaaaaacgttaattttgacccatgcaatgtatttttggctattgctacaaatataccaaaGCATATGACAGGGTcacaaactgaaaataaatagcttcaaataattaattatttgctttcaaagcattttcaaacattgtacaactaaatcttgttaaaaatgtttatgtgtaGTTGACATTGGACTGTGTCCTATGGCCTgtcatagcaaaaaaaaaaaaaaaaaaagcatacaaataacatgagaattCTTAGAGTTACACATAGTGTGAGAGAGGTGTATCTTCAATGTgagacgtttttgtttgtttgtcagtcACACCTCAGGACACACTGATAAGTCAACTATCCGTATacttattaaatgttttcagttttgcaaaAACAGTCCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155007 lncRNA downstream 26881 9393877 ~ 9394208 (-) True G104976
TU155006 lncRNA downstream 28849 9392033 ~ 9392240 (-) True G104975
XR_006252658.1 lncRNA downstream 125578 9264495 ~ 9295511 (-) True LOC122358921
TU154948 lncRNA downstream 186002 9234870 ~ 9235087 (-) True G104936
TU154923 lncRNA downstream 280667 9140058 ~ 9140422 (-) True G104922
TU155098 lncRNA upstream 1107 9424230 ~ 9432131 (-) True G105019
TU155148 lncRNA upstream 116468 9539591 ~ 9540814 (-) False LOC122359087
XR_006252683.1 lncRNA upstream 116939 9540062 ~ 9541822 (-) True LOC122359087
TU155150 lncRNA upstream 119193 9542316 ~ 9543148 (-) True G105055
TU155151 lncRNA upstream 119354 9542477 ~ 9543148 (-) False G105055
XM_043259319.1 mRNA downstream 519 9419067 ~ 9420570 (-) True or95a1
XM_043259320.1 mRNA downstream 542 9419067 ~ 9420547 (-) False or95a1
XM_043259313.1 mRNA downstream 6141 9408846 ~ 9414948 (-) False p4ha3
XM_043259312.1 mRNA downstream 6141 9408846 ~ 9414948 (-) False p4ha3
XM_043259311.1 mRNA downstream 6141 9408846 ~ 9414948 (-) True p4ha3
XM_043259351.1 mRNA upstream 70925 9494048 ~ 9497634 (-) False rrp8
XM_043259350.1 mRNA upstream 70925 9494048 ~ 9497624 (-) True rrp8
XM_043259238.1 mRNA upstream 107760 9530883 ~ 9535116 (-) True ywhag2
XM_043258232.1 mRNA upstream 137169 9560292 ~ 9565762 (-) True proca1
XM_043259898.1 mRNA upstream 145537 9568660 ~ 9572734 (-) True rab34a
unassigned_transcript_2147 other downstream 25486 9395530 ~ 9395603 (-) True trnat-agu_65
unassigned_transcript_2146 other downstream 25779 9395237 ~ 9395310 (-) True trnaa-ugc_117
unassigned_transcript_2145 other downstream 26036 9394964 ~ 9395053 (-) True trnar-ucu_51
unassigned_transcript_2144 other downstream 26408 9394608 ~ 9394681 (-) True trnat-agu_64
unassigned_transcript_2143 other downstream 26680 9394336 ~ 9394409 (-) True trnat-ugu_47
TU155103 other upstream 11303 9434426 ~ 9436797 (-) True G105022
TU155104 other upstream 11303 9434426 ~ 9436797 (-) False G105022
TU155158 other upstream 129511 9552634 ~ 9555787 (-) True G105059
TU155454 other upstream 340748 9763871 ~ 9796890 (-) True dynll2a
TU155453 other upstream 370625 9793748 ~ 9796890 (-) False dynll2a

Expression Profile