RNA id: XM_043235636.1


Basic Information

Item Value
RNA id XM_043235636.1
length 2864
RNA type mRNA
GC content 0.43
exon number 17
gene id LOC122341930
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3831970 ~ 3846985 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGTATATTGTATTCTCTTCTTTATAGGGTTGATTGTTCACGGTCCCTCTGGTCCTCTGGTTGCTCCTCTGGGATCTTCAGTGGTTTTACCCTGTTATGTTGATGAACTCTTATCAATGAAGGGTCTGGAGGTGGAATGGAGAAGAGCAGACTTAGACACTCTGGTTCATCTCTATCAAGACGGTGAGAGTCGACCAGAGTCCCAGGAGCCGGATTATCAGGATAGAGCTCATTTCTTCACTGATCAGATTCAACACGGAAACTTCTCCCTCCGTCTGGACAACCTGAGACCTGAAGATGAGGGACGATACACATGTAGAGTTCACAGTCGAGAAGATTCTGGAGAGACTGTGATTCAGATAAAAGACGTTGaGCGTTTGCTGGTGTCAGGATCGAGTCGCTCCATATCTGCGTCTGTGGGTGAAGACGTGACTCTGAACTGCTCTGTAGACTCTCACATCACGCCTGAACACATCGAAGAGGTTTCGTGGAAGAAaacagatgaagatgaagatatTCTGGTTCTGCTCGTCCAAAATAATGAGACTTTACCAGATTCAGCGCATGAGCGATACAGAGACAGAGCTGGGTTCTTCACTGCTGAAATCTCCAAAGGAAACTTCTCTCTCAGGCTCAAGAGTGTCAGAACTGAGGATAAAGGGGTTTATATGTGTCAGGTGTTCGCTGGAGTGCTTTCAGCCAATGCGACTGTTGTACTGGAGAGACTGGGTTTCTCTGTTTCACACATAATGGTGCtgattttctgtatttctgcatCTGGATCTGCTCTTCTGCTCTGCTGCCTGATCTACTGCAGATCACGTGCCAAAGTTTTGCATCTTCAGGTTTTGCTGGTGTTTTGTCCAAACATGAGTATGTTTTTTGCGTTCATGCTCTGGGGTTTTGCTGAAGGATCTCTGCACGAGACTGCCTCCTGTTGTACTCTTTACTTTATGAGGCCTCTGATGTTGTTTTGGGCGGcaccatatttaaaaaactttcCAGacATTATTAGAAGATGGATTGACTCTTCAAGCATTGATGTACAAATTTCAGTTTTTAccgtattgttttttttagTTCTTCTCAGACGCACCTGGTCAACAATTGTACAATATACAGAAGCTGATAAAGCAATGATAACTGCCCTCTTTATCTTAATGCTTCTGCTATGTctcattaaagtcattaaagGAATAACTAACATCGTTGTGGAGAAGAAATCGAGCAACGTAGAGACTCGTGAACGGATAAATCATGTATTACAGGGTTGGGAGCTTCTAAGCTGTCGTATTTTGCCTTTATTGCAATTCATTCTTGTGTTCTACAGTTTTGGAGCTGCTAAAAGAGCATTTTTTGTGACTGGAGCTTTACCACTGATAGTGATGTTGTCCGATCAGGAATGGTACCTTACATGTATACGCTTCTGTTCAGAGTGGATTGGGAATTTAATACGATTAATTATCATGTTAGTTGTGAATGGAGCTCTTTTTCCGATGTTATTCCTATACTTCAAAACActggaaaatgaaaaagATCGCTTTGCTTTGGTTTGCATGGTTGGACTTTTCCAGGTGCTGTCAATGATACGCTTTTCATACGACTATCTAGAATTTCCGCGCGTCCATGCTTTGTACGTGTTTGGAGCGGTAGTCCTCGTTCTAGTGAACTCTGCTGGACTGATGACAGAGCTGATCCTGCAAGCAGTAAATGGTGAACGCGCAGTGGAGGATCTGAGGATGGTCGTCTTCCCCTCTGAGTGCCTCTTCATCTTGATCGGCATGGCTGTAGAAATATTCACTTTCTTGAGGTCTGTCGGCAAACGCAAGAAGCGAAAGAAAAACGAAGATAAGAAATGTGGGCATAGACGTGAGAAAACCGAGTTTTGCGAAATGGATCGTTTGCCTGCGTTTGACTGTGAAGCCTCAGCAGCTGAAGACGGCGTCTGTTAGACTCACCTCATGCGCCTTTGTCTGTTGTGCCAAATTTTGTTGGTTGATATTCTGTTACCTTTAGCCGTTTTCGATGACTTTATCAAGCCTTTCACAACCGTGTTGCTTTCTACCGTTGACGGCTTGTTAGAACGCGCCCCGTTCAAGATTCGTGCGCGTGTTAAACGAACCGCATACAGACACGAGCCTTTAACCACAAACTGTTCAGTTACATTAACAccgtttatattatatacaatgcTTTTGGCCTTAACCAGAACCTGTTGGTCTGGATGAGCGCCGTgcagtaaagaaagaaaataaaacacttctgCTATCCAGAGAGATGAACGAGACCCTGATTTCCGCTAAACATGGAGCTAATTTTTGTGGCAAGTAATTGAAGCATGCTTTTCTCTTTTGAACCTAATTATGAAGACAAACCACAAAGATTTTCAGCAGCTTTTGCACAGTTTCATTGGTTGTTTTGGGAGATGATGAAGAGATTTGTGCCCACAGCTCTTATTATGATTAACTATGATCATTATGATTCATTTATCGGCCTTCTAGTTTGGTATCATGAAGCGGATTTTTGTGGCGCAGTCAACCAGATGTTCGTTTTATATTCAGAAAGCCGTCGTGTGTCACAACCAAGAAGCATGCGTACATCTCAAATACGTTTTGTTTGAACGTTGACGTAGCATTTTATGCAATAtgctgatgtttttatccaGAAGCGTTTGCTAGCGTCAAGATCGAGTCGCTACAAGTGACGAAACACAAGGGTTCACTTACTATTTCTGACCCTGAACTGTGAACGATCGCTCCAAGTGTCTTACTGGTTTAGTCTAAGATGGCcgtacaatatatattttgtgtgatgtaaacaagacaaacaatttGGTACAATTTTAGTACAGTTTCGTTTCAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250532.1 lncRNA downstream 45105 3783737 ~ 3786865 (-) True LOC122342142
TU25026 lncRNA downstream 210101 3621489 ~ 3621869 (-) True G16815
TU24978 lncRNA downstream 305122 3503008 ~ 3526848 (-) True G16779
TU24980 lncRNA downstream 306732 3475325 ~ 3525238 (-) True G16780
TU25171 lncRNA upstream 290444 4137118 ~ 4138203 (-) True G16901
TU25199 lncRNA upstream 387701 4234375 ~ 4277855 (-) True G16926
TU25205 lncRNA upstream 418537 4265211 ~ 4267492 (-) True G16930
TU25204 lncRNA upstream 420029 4266703 ~ 4267492 (-) False G16930
TU25209 lncRNA upstream 468507 4315181 ~ 4315571 (-) True G16933
XM_043235089.1 mRNA downstream 3278 3814881 ~ 3828692 (-) False map2k4a
XM_043235091.1 mRNA downstream 3279 3814881 ~ 3828691 (-) False map2k4a
XM_043235095.1 mRNA downstream 3279 3814881 ~ 3828691 (-) False map2k4a
XM_043235093.1 mRNA downstream 3279 3814881 ~ 3828691 (-) False map2k4a
XM_043235090.1 mRNA downstream 3279 3814881 ~ 3828691 (-) False map2k4a
XM_043235641.1 mRNA upstream 1306 3847980 ~ 3863851 (-) False LOC122341931
XM_043235642.1 mRNA upstream 1307 3847981 ~ 3863850 (-) False LOC122341931
XM_043235640.1 mRNA upstream 1307 3847981 ~ 3863850 (-) True LOC122341931
XM_043232052.1 mRNA upstream 20081 3866755 ~ 3874839 (-) True LOC122334199
XM_043232054.1 mRNA upstream 30973 3877647 ~ 3881562 (-) True mif4gdb
XR_006250494.1 other downstream 348521 3473444 ~ 3483449 (-) False LOC122341810
TU24952 other downstream 512906 3315438 ~ 3319064 (-) False LOC122333478
TU24533 other downstream 1177940 2649842 ~ 2654030 (-) True G16478
XR_006250470.1 other downstream 1191879 2631782 ~ 2640091 (-) False nup85
XR_006250471.1 other downstream 1347746 2479128 ~ 2484224 (-) True LOC122341591
XR_006250503.1 other upstream 4678 3851352 ~ 3863851 (-) False LOC122341931
TU25103 other upstream 137993 3984667 ~ 3985667 (-) False LOC122340684
TU25102 other upstream 139566 3986240 ~ 3987431 (-) False LOC122340684
TU25236 other upstream 556423 4403097 ~ 4407697 (-) True G16953
TU25544 other upstream 600706 4447380 ~ 4448881 (-) True G17131

Expression Profile