RNA id: XM_043235642.1


Basic Information

Item Value
RNA id XM_043235642.1
length 2980
RNA type mRNA
GC content 0.39
exon number 14
gene id LOC122341931
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3847980 ~ 3863851 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCCTGGTGCTGCAGCCGGATCTGTCTTGTTTGAATAGACTGTTCATctgccttcagtgtcacagcaGACATGATCGTttggctatttatttattgtacatttgaaGATGCAGCTAGCaaactgtgttctgttgttAATACCGCCGATGATCGCTCGTGGGTTGTTTGTTCACAGTCCTTCTGGTCCTCTGGTTGCTCCTCTGGGATCTTCAGTGGTTCTGCCCTGTTATGTTGATGAACTCTTATCAATGAGGGGGCTGGAGGTGGAATGGAGAAGAGCAGACTTAGACACTCTGGTTCATCTCTATCAAGACGGTGAGAGTCGACCAGAGTCCCAGGAGCCGGATTATCAGGATAGAGCTAATTTCTTCACTGATCAGATTCAACACGGAAACTTCTCCCTCCGTCTGGACAACCTGAGACCTGAAGATGAGGGACGCTACACATGTAAAGTTTACAGTCAAAATGATTCTGGAGAGACTGTGATTCAGATAAAAGACGTTGaGCGTTTGCTGGTGTCAGGATCGAGTCGCTCCATATCTGCGTCTGTGGGTGAAGACGTGACTCTGAACTGCTCTGTAGACTCTCACATCACACCTGAACACATCGAAGAGGTTTCATGGAAAAAAACAGATGCAGATGAAGATATTCTAGTTCTTCTCTACCAAAACAATAAGATTTTACCAGATTCATCACATGAGCGATACAGAGACAGAGCTGAGTTCTTCACTGCTGAAATCTCCAAAGGAAACTTCTCTCTCAGACTGAAGAGTGTCAGAACTGAAGATAAAGGGGTTTATATGTGTCAGGTGTTCGCTGGAGGACTTTCAGCCAATGCAACTGTGAAACTGGAACTGGGTTTCTCTATATTACACACAATAATGGCGATTCTCTGCATTACTGCATCTGGATCTGCACTTCTGCTCTTCTTTTTGATCTACTGTACATCGCATAATAATGACACGGTTTTTCGTCTTCAGATGTTTCTAGTTTTCGGtccaaatattttactttttcttgcttttgtcCTCTGGGGTGTTTCTGAGGttctctTTAAAAGTGCCTGGCAGAAAAGTCTAAGCTATACTGGATTTGAGAGTATCGTGATACCAGTCCTCTTTGTGATAGTGATTTTGCTAAACCTCTTCTATATTATTTACTtgTTGGCTAGATTCATTAACAAATTAAGTGAACGCACGCTTACTAGATTTGGTGTTCTGGTTGGTACAAGCTTTAATATTGTACCTGCATTTCAATTCATCCTCCTGTTCTTCACCTTTGGGTCTGGCAGAGGAGGACTTCTTATTGTTGCAAGTTTACCAGTTTTACTAGCAGCGATGAGATATGATTGGGATCGTACGTGTGGAAATAAGATGGGTTGTTCAGCTTTGCTCATGAGAATAGTGTGGTTAATTCTCTTGTTAGTGGTCAATGCTGCAATcgtctttttttacattataactctggaaaatgaaaaagATAGTATTGGATGGGCCTGTACGATTGGTTTCCTGCAAGCACTCTGGGCAGTGATCAACTTCACACGCTCGTTTGATTTCGAATTGCTCCGTGCTGTTCCTGTCTATGTGTTTGGATCAGTTATAGCTGTGATACTGAACTCTGCTACACTGACGACTGAACTCGTACTGAAAGCAGTTAATGGTGATCGCGTATTTGGAGACCTGAGAATCATCACCTTTTCTACCGAAAGCATCTTTGCCTTGTCTCTGCTGAGTCTACAAGTATTTGAACCCTGGATGAGAACATATCTGCAGTCACATCGGCAGGATGCAGCAGGATCTGACGGGCCTCCAGCCAGTGAATCAAACCAGACGCGCACCGCGAGAGAATCATTCGAAATTAATCCTTTACTGAATGGATGTCAGGATGCTGCTAGGAGAAACAGACGGCACTCGGTCTGATTCAGGGCTATCACAACGAGAGAAAAACACTCTCTATCACACCGACAGTCACTTGAGACtaaaattcagttgtttttttaaaaaaggttttcaaaatagcaaaattgtactttttttttactatttatatgtACTTTTACATTGCAACTAAGATGAGTTTCTATTGTGAgctttgtatattatttatattctgacACATTTCTATCCAATCATGATCCCAGTTTGATTTCTTGCTTTCTCTTATATTCCCGTCGCCTTTCATCTTTGTCCGTTcgctctaaaaacagctgcTTTGCTTGTCTTTACCTCTCCCAGCCTCTTTGTCCCACGCATTGGTCGCATGACGTCAAATAAGCTCATTTTCATCCTCTAGTTCAATTAGTAATTTAGCGCTTCTGTTATTTTGAACAGACTTCAGTTTCCCAATTTCTCaactgcaaatgtatttattctgaaaaacagGGCGGTGCGCATGTGCTGAACCTGAAAAAACTGAGCTCCTTTTTATGCTCTACACATaaagttcaattaaaataagtgtgaatatttattttcactattctgtttaattttatgAACTACTTTGCATTATTTGGTTACACGTTTATGCGCGACATTGAGAAGAGGGGAGGGTAAAGCAATGAgtcaagtatttttttccttattttgaaatatgattaaaaCTGTTGCGTCCAGCACAATTCCACTCAAATAtagattataataaaatacagcatATCCAACATATATCCACATACCTGGCAAAAACCTGATTCGGGAATGCTGTGTCTCATggtattgtttaaatgtttgtttgttttttcatttgtacatttctcagttttatgTGAGAGAAAGTTCTTAGACTGAATCAATGCACTtcttgtcaagaaaaaaaaaattataatattttaatatatttttaacgaattaaactgaaaatgtatcaCGATTAATGTTGCACAGCACtacaatacattattattatttttattattttagaaatacatgctattgcctttaaaataaacggaataagcacaaaaatacctggattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250532.1 lncRNA downstream 61116 3783737 ~ 3786865 (-) True LOC122342142
TU25026 lncRNA downstream 226112 3621489 ~ 3621869 (-) True G16815
TU24978 lncRNA downstream 321133 3503008 ~ 3526848 (-) True G16779
TU24980 lncRNA downstream 322743 3475325 ~ 3525238 (-) True G16780
TU25171 lncRNA upstream 273268 4137118 ~ 4138203 (-) True G16901
TU25199 lncRNA upstream 370525 4234375 ~ 4277855 (-) True G16926
TU25205 lncRNA upstream 401361 4265211 ~ 4267492 (-) True G16930
TU25204 lncRNA upstream 402853 4266703 ~ 4267492 (-) False G16930
TU25209 lncRNA upstream 451331 4315181 ~ 4315571 (-) True G16933
XM_043235639.1 mRNA downstream 996 3831970 ~ 3846985 (-) False LOC122341930
XM_043235636.1 mRNA downstream 1307 3831970 ~ 3846674 (-) False LOC122341930
XM_043235635.1 mRNA downstream 1587 3831970 ~ 3846394 (-) False LOC122341930
XM_043235633.1 mRNA downstream 1587 3831970 ~ 3846394 (-) False LOC122341930
XM_043235634.1 mRNA downstream 1926 3831970 ~ 3846055 (-) True LOC122341930
XM_043232052.1 mRNA upstream 2905 3866755 ~ 3874839 (-) True LOC122334199
XM_043232054.1 mRNA upstream 13797 3877647 ~ 3881562 (-) True mif4gdb
XM_043231153.1 mRNA upstream 18050 3881900 ~ 3888478 (-) True LOC122333498
XM_043234156.1 mRNA upstream 38310 3902160 ~ 3908979 (-) True LOC122340901
XM_043234278.1 mRNA upstream 78090 3941940 ~ 3946465 (-) True LOC122340995
XR_006250494.1 other downstream 364532 3473444 ~ 3483449 (-) False LOC122341810
TU24952 other downstream 528917 3315438 ~ 3319064 (-) False LOC122333478
TU24533 other downstream 1193951 2649842 ~ 2654030 (-) True G16478
XR_006250470.1 other downstream 1207890 2631782 ~ 2640091 (-) False nup85
XR_006250471.1 other downstream 1363757 2479128 ~ 2484224 (-) True LOC122341591
TU25103 other upstream 120817 3984667 ~ 3985667 (-) False LOC122340684
TU25102 other upstream 122390 3986240 ~ 3987431 (-) False LOC122340684
TU25236 other upstream 539247 4403097 ~ 4407697 (-) True G16953
TU25544 other upstream 583530 4447380 ~ 4448881 (-) True G17131
TU25560 other upstream 586465 4450315 ~ 4453135 (-) True G17133

Expression Profile