RNA id: XM_043234278.1


Basic Information

Item Value
RNA id XM_043234278.1
length 1436
RNA type mRNA
GC content 0.54
exon number 7
gene id LOC122340995
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3941940 ~ 3946465 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGCCCGCCCCCTCGCGCCCGTCGCAGGATCCGTGTCGTCACTCCCGCGTCTTCGCGCAAACGTCGTAAAGACGCGACGGTAGTTACGCACGGCGTTGAGTGTGTAGCGCTTGCCCATTCATCATGGCTCCATCACCGACCAAGCGCAGAGAGCGTTCGGAGGACAAACCCAGGGAGCGTGGGAAGGAGAAGGCCGCTGGGAAAGAGGGAGCTGAGAAGGAGCGAGGCCGAGACAAGATCCGCAAGCGCCGCAGCAACTCCaccggcagcagcagcagcagATCCAGGTCTAGCTCCAGCTCCAGCAGCAGCTCTGGGTCCAGCTCGGGCTCCTCCAGCGGGTCCAGCTCGTCTTCCGGTTCCAGCCGCTCCGGGTCGTCCAGTTCCTCTCGTTCCTCTAGCTCGTCCGGGTCCTCCGGCTCTCCCAGCCCGAGCCGCCGTCGCCACGACAACCGACGCCGCTCTCGATCAAAGTCCAAATCACAAAAACGGACTGATGagaaggagaggaagaggaggagcccGAGCCCCAAACCAACCAAGCTTCATCTGGGAAGACTCACCAGGAACGTAACCAAGGAACACATTCAAGAGATCTTCTCGACGTACGGCAAGATCAAGATGATTGATATGCCTCCAGACCGTTTGCACCCGAATCTGTCAAAGGGTTATGCTTATGTGGAATATGAGTCTCCAGAGGACGCCCAGAAAGCCCTCAAACACATGgatggagGTCAGATAGACGGTCAGGAAATCACAGCCACGGCCGTCCTGGCCCAGAGGATACGCCCCGGCCCGAGAAGACCGTCTCCTCCGCGCCGCATGCCTCCTCCACCTCCCATGTGGCGCCGTACGCCGCCTCGCATGAGGAGAAGGTCTCGGTCTCCACGGCGACGCTCGCCCGTGAGGAGACGCTCTCGCTCCAGGTCTCCGGGACGCAGGCGACATCGTTCCCGCTCCAGCTCCAACTCGTCCCGTTAGCGAGATGCTCCATTCTCACCGGCGGCTTTTCTTTTTGGCCCGCTCATATTTTAGTTGGATATGATCGATAAATAGTCCAATTGTTTTCCCTTTTGTCTAGTCCCTCAGGATTGTGTGTAAACCCAGTCTCATAACATCTATGTTAGGGTGGAtgttggctttttattatttctgtgttCGTACGCTCACTGGGTGTGTGctagataatgttttttttttttctctttttgtaatGTGCTTTTGTTCTGAGAAATCCGGCTTTTTACCGTTTCGTCAAAGGGGTTAAAAAGCAGAActtgtttttatccaaaaagttaacattttgcCGAATGGCTCGTTTGTTACATCAGCTGTTCCGCAAAAAGTTCCTCAAGATCGCCTTCTAATCCTGAAAAATCGAATGATCCGTAAGTTTGGAAACGCAATGTCAATAAAccagtttaacaaaaaaaaaa

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0016607 nuclear speck cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14325 RNPS1; RNA-binding protein with serine-rich domain 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250532.1 lncRNA downstream 155075 3783737 ~ 3786865 (-) True LOC122342142
TU25026 lncRNA downstream 320071 3621489 ~ 3621869 (-) True G16815
TU24978 lncRNA downstream 415092 3503008 ~ 3526848 (-) True G16779
TU24980 lncRNA downstream 416702 3475325 ~ 3525238 (-) True G16780
TU25171 lncRNA upstream 190653 4137118 ~ 4138203 (-) True G16901
TU25199 lncRNA upstream 287910 4234375 ~ 4277855 (-) True G16926
TU25205 lncRNA upstream 318746 4265211 ~ 4267492 (-) True G16930
TU25204 lncRNA upstream 320238 4266703 ~ 4267492 (-) False G16930
TU25209 lncRNA upstream 368716 4315181 ~ 4315571 (-) True G16933
XM_043234156.1 mRNA downstream 32961 3902160 ~ 3908979 (-) True LOC122340901
XM_043231153.1 mRNA downstream 53462 3881900 ~ 3888478 (-) True LOC122333498
XM_043232054.1 mRNA downstream 60378 3877647 ~ 3881562 (-) True mif4gdb
XM_043232052.1 mRNA downstream 67101 3866755 ~ 3874839 (-) True LOC122334199
XM_043235642.1 mRNA downstream 78090 3847981 ~ 3863850 (-) False LOC122341931
XM_043234328.1 mRNA upstream 6354 3952819 ~ 3954039 (-) True LOC122341029
XM_043234315.1 mRNA upstream 15804 3962269 ~ 3964517 (-) True LOC122341020
XM_043234302.1 mRNA upstream 29869 3976334 ~ 3977339 (-) True LOC122341012
XM_043234256.1 mRNA upstream 33682 3980147 ~ 3981915 (-) False LOC122340986
XM_043234265.1 mRNA upstream 33682 3980147 ~ 3981915 (-) True LOC122340986
XR_006250503.1 other downstream 78089 3851352 ~ 3863851 (-) False LOC122341931
XR_006250494.1 other downstream 458491 3473444 ~ 3483449 (-) False LOC122341810
TU24952 other downstream 622876 3315438 ~ 3319064 (-) False LOC122333478
TU24533 other downstream 1287910 2649842 ~ 2654030 (-) True G16478
XR_006250470.1 other downstream 1301849 2631782 ~ 2640091 (-) False nup85
TU25103 other upstream 38202 3984667 ~ 3985667 (-) False LOC122340684
TU25102 other upstream 39775 3986240 ~ 3987431 (-) False LOC122340684
TU25236 other upstream 456632 4403097 ~ 4407697 (-) True G16953
TU25544 other upstream 500915 4447380 ~ 4448881 (-) True G17131
TU25560 other upstream 503850 4450315 ~ 4453135 (-) True G17133

Expression Profile