RNA id: TU282477


Basic Information

Item Value
RNA id TU282477
length 384
lncRNA type inter_gene
GC content 0.27
exon number 2
gene id G190367
representative True

Chromosome Information

Item Value
chromosome id NW_025048446.1
NCBI id JAEQBD010000791.1
chromosome length 1202875
location 1049350 ~ 1053122 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTGTGcaacctttttttattgttatcgtTTTGAATGTTAGGTATAAACCAGTACAAAACacgccaagaaaaaaaaaaagatatactaTACACAAAAACTTCTTATAAAGTCACAGACGCCAATCATTACGAAATAATAATTGGGCTAAATAATAATTGGTTCATACATAATGTCTGGAGGTCTAAGCATAAGtggtttaaaatatgttttataaaagaaaagaaaaaaaaaattcagtagcTTCAATTTAATCAGacaatatttttgctttttggttTCGTTTATGCAacttaatgcatattttgtatattttacaaccaaacaatttttgaaaatgatgtattatattggaagtgtgtgtgcgtgtccatattttatatata

Function

GO:

id name namespace
GO:0015629 actin cytoskeleton cellular_component

KEGG:

id description
ko04510 Focal adhesion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006249000.1 lncRNA upstream 103825 937018 ~ 945525 (+) True LOC122335692
TU282468 lncRNA upstream 135283 908151 ~ 914067 (+) True rab31
TU282452 lncRNA upstream 184387 862415 ~ 864963 (+) True G190353
TU282449 lncRNA upstream 189816 859310 ~ 859534 (+) True G190350
XR_006249003.1 lncRNA upstream 196598 845940 ~ 852752 (+) True LOC122335698
TU282600 lncRNA downstream 127699 1180821 ~ 1181264 (+) True G190443
TU282602 lncRNA downstream 128340 1181462 ~ 1181721 (+) True G190445
TU282604 lncRNA downstream 129124 1182246 ~ 1182740 (+) True G190447
TU282606 lncRNA downstream 130652 1183774 ~ 1184048 (+) True G190449
XM_043233531.1 mRNA upstream 2386 1026889 ~ 1046964 (+) True tle2c
XM_043233530.1 mRNA upstream 2386 1026895 ~ 1046964 (+) False tle2c
XM_043233532.1 mRNA upstream 2386 1026903 ~ 1046964 (+) False tle2c
XM_043233522.1 mRNA upstream 26469 1008150 ~ 1022881 (+) True chico
XM_043233500.1 mRNA downstream 70962 1124084 ~ 1175611 (+) True scn12aa
TU282479 other upstream 26474 1019684 ~ 1022876 (+) False chico
TU282480 other upstream 26474 1019684 ~ 1022876 (+) False chico
TU282478 other upstream 29925 1008176 ~ 1019425 (+) False chico
XR_006248997.1 other upstream 212672 817333 ~ 836678 (+) True sirt6

Expression Profile