RNA id: XR_006249000.1


Basic Information

Item Value
RNA id XR_006249000.1
length 970
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id LOC122335692
representative True

Chromosome Information

Item Value
chromosome id NW_025048446.1
NCBI id JAEQBD010000791.1
chromosome length 1202875
location 937018 ~ 945525 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTAACTTCGGGCCAGGCGCGTGTGCGCGCGCCAGATGAAATCCGCCGCGTCCGACATCGCGTGCAACTTCAGTAGTCAGGTCCTCTGTGGTATATGAAATGTTACGCTCTCtaccagtggatgctctgcagcgaatgggtgccgtcagaatgagagtccaaacagctgataaaaacattacaataatcctcAGCTCCTGGTGAatcatatataaatgaacagCGTGGACATCCTTCAAAACATcccagaagaaagaaagtcaagtTTGGactgacacgaggCTCCAGAGTTATGACTATGAACCGAGAACCTGATGGTGGTCTTCAAATCATGTACTTCCGAAGGTACCTGATGCATGTCTACTAATGGATAGATATCTCCAGTTATGATGGACCTGCTTACATGCTACTCTTCAGAATGTTTACTATGGAACAATATCtactactgtttttaaaaaacaaatactgcgTATCTATTGCGCAGTACTTAGCAAGTGGAATCTAGTATTTCATTCCCAACACTGGAGAAGAGCCAGTGTGTCCAGTGTTATTCCGGTCATAAGCATCAGGTCCTCTCAAATCAACCAACTGGCTCTATGGCCGCTGAACCGGTGACTGATGGCCATCTGTGTTGTGTCAAAAGTACCAAATTAACCCACACAGATAGCAGTAATTGCTCTAGTGTGTCGTCCCAATgggtttatgtgtgtgtgtgtgtgctgtttggCATCAGGATTCAGGgttttttgttgtcgttgtgAATCCGTATGGAGACATTCTCCTTATCTGTCTTTAAAACACATGTACTTGTTTATTTGGGTCTTTCATTTCTGTGGCATAAACAGGAATAACCAGTAAGTTGAAGTATAGTAGCCTATCTtaagtttttatctttttaatttccCCCGTGGTCCATTCACAATGTTAGTCATGGTTTCTTGAGCCAAACCGGTTTAATTTTCATGACTGT

Function

GO:

id name namespace
GO:0000003 reproduction biological_process
GO:0022412 cellular process involved in reproduction in multicellular organism biological_process
GO:0022414 reproductive process biological_process
GO:0051704 multi-organism process biological_process
GO:0003006 developmental process involved in reproduction biological_process
GO:0046332 SMAD binding molecular_function
GO:0070412 R-SMAD binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282468 lncRNA upstream 22951 908151 ~ 914067 (+) True rab31
TU282452 lncRNA upstream 72055 862415 ~ 864963 (+) True G190353
TU282449 lncRNA upstream 77484 859310 ~ 859534 (+) True G190350
XR_006249003.1 lncRNA upstream 84266 845940 ~ 852752 (+) True LOC122335698
TU282405 lncRNA upstream 227554 703536 ~ 709464 (+) True G190314
TU282476 lncRNA downstream 28736 974261 ~ 1052949 (+) False G190366
TU282475 lncRNA downstream 102574 1048099 ~ 1052949 (+) False G190366
TU282477 lncRNA downstream 103825 1049350 ~ 1053122 (+) True G190367
TU282474 lncRNA downstream 104632 1050157 ~ 1104473 (+) True G190366
TU282600 lncRNA downstream 235296 1180821 ~ 1181264 (+) True G190443
XM_043233505.1 mRNA upstream 8829 920957 ~ 928189 (+) True LOC122335651
XM_043233515.1 mRNA upstream 23604 906262 ~ 913414 (+) False rab31
XM_043233519.1 mRNA upstream 29970 894128 ~ 907048 (+) True ralbp1
XM_043233540.1 mRNA upstream 102588 817333 ~ 834430 (+) False sirt6
XM_043233544.1 mRNA upstream 268827 662618 ~ 668191 (+) True hsd11b1lb
XM_043233517.1 mRNA downstream 29048 974573 ~ 1007421 (+) True gna11b
XM_043233518.1 mRNA downstream 35294 980819 ~ 1007421 (+) False gna11b
XM_043233522.1 mRNA downstream 62625 1008150 ~ 1022881 (+) True chico
XM_043233523.1 mRNA downstream 62625 1008150 ~ 1022881 (+) False chico
XM_043233531.1 mRNA downstream 81364 1026889 ~ 1046964 (+) True tle2c
XR_006248997.1 other upstream 100340 817333 ~ 836678 (+) True sirt6
XR_006248998.1 other upstream 100340 817333 ~ 836678 (+) False sirt6
TU282180 other upstream 589864 338941 ~ 347154 (+) True G190175
TU282478 other downstream 62651 1008176 ~ 1019425 (+) False chico
TU282479 other downstream 74159 1019684 ~ 1022876 (+) False chico
TU282480 other downstream 74159 1019684 ~ 1022876 (+) False chico

Expression Profile