RNA id: XM_043233515.1


Basic Information

Item Value
RNA id XM_043233515.1
length 1273
RNA type mRNA
GC content 0.46
exon number 8
gene id rab31
representative False

Chromosome Information

Item Value
chromosome id NW_025048446.1
NCBI id JAEQBD010000791.1
chromosome length 1202875
location 906262 ~ 914067 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGAAGGGAACGAGTCGAGTGCCGTTTGTGGTGGAGTTGTTGGTTTCCTGACAGCTCAGTCGAAATTCTCCAGTCGGTTTCCGTTAGATTTGGGAAGAAGATGGTCAGAGTTTGTGTTTTGCGGACGAACAGTCCCCTGTGACCGTGATGGACGAGAGTCGACAAAACAAGGCCGGAGACTGTTAAAAGTATGCTTCAGCTGCCTTAACGTACTTCACAATGGCCATCAGGGAGCTGAAAGTTTGTCTGCTCGGGGACACAGGCGTGGGGAAATCAAGCATCGTGTGTCGTTTCGTACAAGATCACTTCGACCACAACATCAGTCCAACGATAGGtgcatcttTTTAACTAAGACAGTCCCCTGTGGAAATGAACTTCACAAGTTTCTGATCTGGGACACTGCAGGGCAGGAACGaTTTCATTCGTTGGCTCCCATGTATTACAGGGGCTCTGCAGCGGCCGTCGTTGTTTACGACATCACAAAGCTTGACTCTTTCCAGACGTTGAAGAAGTGGGTGAAGGAGCTGAAGGAACACGGGCCGGAGGATATAGTCGTGGCTATAGCAGGAAATAAAACCGATCTGGGAGATATCAGgGAGGTTCCAACTAAAGAGGCAAAAGATTTCGCAGAGTCAATTGCAGCCATATTCATGGAGACCAGTGCCAGAAATGCTGTAAACATAGAGGAGCTGTTTCAGAAAATCAGTCGACAGATCCCTCCGCTGGAGAACACAGACGCCGACAGCCACGAGTCCTTTAAACTGACACGACAGCCTCCTCCCTCCAGCAGACGCTGCTGTTAGACATCACTACAAACACCCTACAACATGATGGTATTTGACCCATGCGATACCTAGACGAGGATCGCACGACTGATAGACGTACAGGAAACAAAGCAATTCTGCCTAACAACCGTTTCATACCAAGTCGGAATATGGCATTGACACGAGAGTTATCGCCACGTGGAATCGTTTCGcttaaaaagcctttttaaatgcagaattgtgacaaataaaaacgcTAGTAGTTAGCACAAAGTTTACACAAGAATAAGTGCCTTTAGAAAACGCCATTTTTATGTTTGGCATTGCCGTTTTGATACGTAAAACGTTTTAAAGAGGTTAATGTGGCTTTATTTGACCACTTACGATGAAGTCTAGAGGAAAGAAAGACGTTCGCTGGTGTGTCGGTCACACTTCGTATTACAGTGtttattgtattatgtatttacataccACTAGTGCTTCGTACTAATAAAGTGTGTGTTAAGTA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282452 lncRNA upstream 41299 862415 ~ 864963 (+) True G190353
TU282449 lncRNA upstream 46728 859310 ~ 859534 (+) True G190350
XR_006249003.1 lncRNA upstream 53510 845940 ~ 852752 (+) True LOC122335698
TU282405 lncRNA upstream 196798 703536 ~ 709464 (+) True G190314
TU282400 lncRNA upstream 224835 676623 ~ 681427 (+) True G190311
XR_006249000.1 lncRNA downstream 23604 937018 ~ 945525 (+) True LOC122335692
TU282476 lncRNA downstream 60847 974261 ~ 1052949 (+) False G190366
TU282475 lncRNA downstream 134685 1048099 ~ 1052949 (+) False G190366
TU282477 lncRNA downstream 135936 1049350 ~ 1053122 (+) True G190367
TU282474 lncRNA downstream 136743 1050157 ~ 1104473 (+) True G190366
XM_043233540.1 mRNA upstream 71832 817333 ~ 834430 (+) False sirt6
XM_043233544.1 mRNA upstream 238071 662618 ~ 668191 (+) True hsd11b1lb
XM_043233528.1 mRNA upstream 244358 652741 ~ 661904 (+) True zmp:0000000521
XM_043233547.1 mRNA upstream 294153 555603 ~ 612109 (+) False LOC122335697
XM_043233505.1 mRNA downstream 7543 920957 ~ 928189 (+) True LOC122335651
XM_043233517.1 mRNA downstream 61159 974573 ~ 1007421 (+) True gna11b
XM_043233518.1 mRNA downstream 67405 980819 ~ 1007421 (+) False gna11b
XM_043233522.1 mRNA downstream 94736 1008150 ~ 1022881 (+) True chico
XM_043233523.1 mRNA downstream 94736 1008150 ~ 1022881 (+) False chico
XR_006248997.1 other upstream 69584 817333 ~ 836678 (+) True sirt6
XR_006248998.1 other upstream 69584 817333 ~ 836678 (+) False sirt6
TU282180 other upstream 559108 338941 ~ 347154 (+) True G190175
TU282478 other downstream 94762 1008176 ~ 1019425 (+) False chico
TU282479 other downstream 106270 1019684 ~ 1022876 (+) False chico
TU282480 other downstream 106270 1019684 ~ 1022876 (+) False chico

Expression Profile