RNA id: XM_043233505.1


Basic Information

Item Value
RNA id XM_043233505.1
length 5388
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC122335651
representative True

Chromosome Information

Item Value
chromosome id NW_025048446.1
NCBI id JAEQBD010000791.1
chromosome length 1202875
location 920957 ~ 928189 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTCCGGCGCGCTATTAAAGCCTCGAGTAGACGCGCGGCGCCGACACACGGTTCTGTCCTGGAGCGAGAGGTGAGACGAGCGACGACACATGGATTGAAGCGAGGACACTCACTTTAAAACCCGACCACAAACCACTTCACGGTGCGATTGCACGTCTCTCCCAGACCCCGACGAGAGATGTGGCTGCTGGAAAAGATCCGCGGTTCAGTGGAGGGAAACGTTCTCCGGCAGGGAGACTCGGCTGACAAACAGAGCAAAGCCCCCACCTACTGCAATGTCCTCACCCCTGACAAGATTCCCGACTTCTTCATTCCTCCCAAACTGGTGTGCTGCCCCCCAGAGGAGGAGACGCCGGAGATGAAGCCAAAAAACGGCCTCCATTCTTCCACGTCCGAGCAGACCATATGCTGCAAGACGCCGCAGGGTAGTCCGCGCAGCCCGCGCCTCATTAACAAGCTGGCTGGAGACACCAAGAACTTGCTCAAAGCTGCAAACCGGCACATCATCCAGATAGAGAGCGCAGATGATTTAGTGGTCGGGGACGTGGGAGACCTCAACACTAATGCCGACCCCCAGTCCCAGACGGCCATGTCCTTGCCCTACGTACCCAAAGCGCAAACCTCCTATGGTTTCGCTACGCTCATGGAAAGTCCTCACACGAGACGTAAAGAGTCCCTCTTCCATAGCGACCCCACAAGTCCGCTCACCTCGCCCAACACCCAACGCAAATCGCAGGGTAACCACTTAAACCCCAGCGACTGTAATATGTCCCATTCCAACCCCTACCGGTACTTCAGCGGAGGGGAGAGCGACACTTGCTCCTCGGCCGAGTCCTCCCCGTTCAACTCCCCTCTGTTGTCCCGCTCCGCATCCCTCCTCAAGATGTTCACCCACGAAACCCAAGCCAAAGTGTCCCGGGCCAAGCGTTCCTTCGCCAGGCACAGCTCTCTCTCCACGGACGAGTGCAGCTCTGTGGAGACCAGCCCGAACATTCAGAGGCGCCTGCGTTGCCCTCCTTCTCCGGCCTTCCGAGGACGGAAATACGGAGGCAACATGGATCGCTTCACGCAGCACTCCGTCAATCTCCACAAGGGAGGAACTCTGCGCATCTGCACAGACTACGACATCGACGCCTCCAGGCTTCACGTTCGCGTGCTGGCGGCCGAGGACCTCTACGACAAGCAGTGCGATGCGAAGAGCATCAACTGTTGCGTGGCTCTGTACCTGAACCCGGGAAAGCTCCAGAAACAGCGGAGCACCATTATCAAGAACAGCCGCAACCCTGTCTTCAACGAGGACTTCTACTTTGACTCACTTCCAGTTGCGCAGGTGAAAAACCTCGCCATCAAAATGAAGGTAGTCAACAAGGGCACCAGTCTGAAGAGAGATACCTTactgggagagagagaggtacCCTTGAAGGAGTTGCTTTCTGGGATCTAGCGTTCCTCTAGTCACATCGATGCGGTCTTCATCTAACTGAACCAGAAAAGGAAATATAAAAGTGAATTGGTCCATTTGGTTACAGAACTGTTTGCAGCTTCCCAACTTGTTTACCAGCAGTCAGTGTATGGATGTACAGTACTGTGTGTCTGAGATATTCTGTAAATACGGCCCATGAGTGTACAGGCATGCTACAATTGTATGAGTTTCCAGGGTTCGTGTTTGTGTTGAGACCAATGTGTTCTTGGTTCCAGACCCCCCCTGGGTCTCACCGTTGGAGACGCAGATCAAAACAGATCTCACACACATGACGTATCTCCACAACAATAGCACATTAGTAAACTGATGCTTTGAAGTCACTTAAGGCCAGAGGCAAATGCATGCTTCTTCAGCCGTTTGAGCCTTAAAAGAACAAGAATGACAAATGTATTTGTCCCCCCGTAACGCTGTAATAACAGTGTTTCGCCTTATGCCTCTTCAGTTCCACTCGGATTCAAGACTGTGACATTTCTCTCAATCTCACTGTAAAACtggactttttcttttttttttttcaaacgctGAATCTGTGCAGTTAAAAACACCCTTCAGCCTTATTGAGTGACAAGCTGCTCACTTTGAGTGACACATAACTTTAGAGAGGGCGTGATTCGTGATTGGACAGAGCATATGGCATCATCGTGAATGTCAAGACAATGTGATTTCTGTAAATAGAAGACTCTTTTAAATCTGCTCGTGTGTAGCTGCATCTGAAATCACTCCCTACTCCCTATAATGCCGATTAAATACTACACAGTTTAGAGAAAGAGCGGAAAATACCACAGTAAACAAAAGCGCCAGAAATGGCCGTGGTATTACCGTGTTTTTTGGACATGCTTGTGAAAATGCTATGCCATTTTTTGCAGTAACTTCAATTGGCATGGGTTCTTGTGCATGCACCATAGTTTTGACATTTACCATGGtgatttatatgaatgttttagtCATGCAGTACCATAATAGATGTCAAAGTATTGTAGTCTTACGATACCTGATCTGATACCATTGCTTTACCATGgtaatgtcattgtttttgggCATGTACTGTGGAAATGCTTTGCTTTTGGACCATTCTGATACCATAAAGTACCATATTTAAATGGCAGtctatacaattatattttcaagTGGCCCATGTTTTTGAACATGTAACCTAAATATACAACTGCCATGATACTGTTTATATGAAAGTATTGCTTTACCGTGATACTGTTTTGTAAGGTATATACTAGTAACCAAACGTTTCACAGGTTAAACTGTTATACCGAGGCTATGCTAACATACACAATGCTTGCAAAGAAGTTTCTTCAGAACAACAACGTGTGTGTTTACGTTCATAAAGGACATTAACGGTGCCCACTAGTGCGATTTTAGCTTCAATCTCAGGTTAGGGAACTTATTGCATtttcgtatatatatatgtgcacttTAATAGAGTACGTTGTCGATTTGCAACCATTTATAGTGCATTGTGGGTATCGTTTAGTAAAGTATTAAATTGTTCAATAAGATGTGGGACATCCCGCAGGAAACATGGAGTTCTTTCATTCAGCGTTTATGTTCAAAACGTGTTCAGATGATTATTCTTCTATTAAATATGTGCACAGTTTTGGCATGTTTATAGTAgatgtgtgtgtagatgtttTCCGATGGGAGCAGTTGCATGGCAAAATGTTCAAGCCCTCATGTTTTCATTTCCGTTGTTCTTGTTTCTATTGTTATAGTCAGATGGTGAAGATGTTAGGTGTGAGCTCACATCTTTTCTTTACATCATCCCCTGTATTGGATCCGCAACGCTATCACTATTTTGAATACTCATTTTTAACAGCCACGGCCCATTTTCTACAGATTTTGTACATGTATTTTTCTCCACTGGCATTTTGAGAAAAAggtgtgaaataataataggctgaaatgaaaagtctgttttgaaaggttttaggtattatatttttaaaaccccGAAAATGAATTTTCACCTCGCCCTATGGTTCcacttttatcatttaaagcCTACTCAGATTATTTTGGACTTTAAAAAGACCCTTGTGTAAGACATTGTAATGCGTCATTAATGGCAAGTTCTTTGTTTGACCTAAAGAGTGTCCGGTAATATACCTGAGAGCTCTTCAATCAGGTTCCTGAGTGGATTTACACAAATTGCACCGCTGTAAGAAGTGAGACAGATTGTCTCGCGGTTTTGGCTTCAGTTCAAGGTGACACATCTGTGCGTAAATCACTTACATATCCTTAagggtgaagtgtgtaatttatgTACCACATGCGACACCAAATGCAATTGCAACTAGTTTTTCATGCTTTGTTTCTCTAATGGAAGTGAGTGATTTACTTGTGCTGCAGGAGTTGTTTGTTGCCCCCACCGAAAATAGTTTCacaagtttcttttttcttttattttgtttaacatgCAGACGAATCGTGCACAATACAACTGCGATCACAGTAGCACAGTAGTTTAAACATCTATCGTCAATGGTGCAGCCACGCGAAATACGCCTCGCtttcaaaacaagctttttttctgttgctcAACGTGACAAAACCTCATGATGAAAATGCGTCTAGAtagtacgccaaataaaaacTCGTTTGGCGTGCAAATAATACGCAGTTTTCGCATGCGTATGATTTGCTGGCGTGCATACGATAAATATGATACGCGTCTACCCAACAGCCCCAATCTTACCCATCACGTAGCATACACATGCCAAAGCCCATTTTTATctataaaatgttgttatttgaGACGCATTCATGAGATGGAAAATTCCCATTTACAAAATGGCTggacaatgaaaaaaattaactcaaaaAGACCTTAAGACCAGGAAAGCGCATTAAGTggtagttttaatttcatatagACTTCAGTTGCTCTTTTCGATTTCGCTTCATGATATAGCATGTCGCATTCTGTACGTTTAAATGATCTGTTTTAGTGCTAAACAGTCTTTCCCTTTAAATGATTTCGTCCCTTTTAAACGCATTTCCGTTTTCcattttttcctcattcattcatttgcgCCTGGGCTTCTTTCACCGTTCATTGAAAGCACTTCCATGTCACTTTCGCCAAGccgaaaacatttattatacattaaagcgaaaaaaaaaaaagcactctgAGCAAACGGTCTGCAATTACTCTCCGGATATGAATCACTCCATATGTGCTTcgtgtgagttttttttttctttcactgtaTGCTACCAGGGCACAATTGttcatttgttaaattaatttcatttctattttcagCGCTCTTTAAAGATGACCAGATTGCAGGTGTATTAGATTTCCCCTCCGAgccacgtaaaaaaaaaaaaaaaaaaaaaaaactgaaagtctTATTCCTCGCGGATATCGAGCTCTTTTGATTGGCAGAGAATTCAAAATAGAAGATGAGAATTAGATTCCAGTAGGGATTCAATATGGGGGGTGTTAAATCACATCCGTTTCCGTAACCATCTTCCTGTACGTGAGATTAAAGTGTCTCGCACTTGTGTTTCGGATAAGTCATGGAGAGATGAAGTGCCTATCCACTGTACTTGATTCCCGTTCCTTCCCTGAGCCCATCACCAGCCGCAGCGTTCCTATGCATGTGTACATAAACACCCCTCACCTTTCAAACCCCCGAAAATCCACATCCTTTTAATAGTGTAGTGTTTCAGCTTGTTGTTATTCTGAAGACGGATGTGGATTTGACTTGAtgcgtttgtgtttgtttgtttgttttagctcCTTTCCAGTGGTTTATTCTCTGTATCTGTATCTCTCTGATTTTCCAGactgattttcttttcataacTTGCTCTATTCATGCTGTTGCTTTGTCTACTTTCTTACGTTGCTCAATAAAAGTTGTGAAGGTGGTGTACAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282468 lncRNA upstream 6890 908151 ~ 914067 (+) True rab31
TU282452 lncRNA upstream 55994 862415 ~ 864963 (+) True G190353
TU282449 lncRNA upstream 61423 859310 ~ 859534 (+) True G190350
XR_006249003.1 lncRNA upstream 68205 845940 ~ 852752 (+) True LOC122335698
TU282405 lncRNA upstream 211493 703536 ~ 709464 (+) True G190314
XR_006249000.1 lncRNA downstream 8829 937018 ~ 945525 (+) True LOC122335692
TU282476 lncRNA downstream 46072 974261 ~ 1052949 (+) False G190366
TU282475 lncRNA downstream 119910 1048099 ~ 1052949 (+) False G190366
TU282477 lncRNA downstream 121161 1049350 ~ 1053122 (+) True G190367
TU282474 lncRNA downstream 121968 1050157 ~ 1104473 (+) True G190366
XM_043233515.1 mRNA upstream 7543 906262 ~ 913414 (+) False rab31
XM_043233519.1 mRNA upstream 13909 894128 ~ 907048 (+) True ralbp1
XM_043233540.1 mRNA upstream 86527 817333 ~ 834430 (+) False sirt6
XM_043233544.1 mRNA upstream 252766 662618 ~ 668191 (+) True hsd11b1lb
XM_043233528.1 mRNA upstream 259053 652741 ~ 661904 (+) True zmp:0000000521
XM_043233517.1 mRNA downstream 46384 974573 ~ 1007421 (+) True gna11b
XM_043233518.1 mRNA downstream 52630 980819 ~ 1007421 (+) False gna11b
XM_043233522.1 mRNA downstream 79961 1008150 ~ 1022881 (+) True chico
XM_043233523.1 mRNA downstream 79961 1008150 ~ 1022881 (+) False chico
XM_043233531.1 mRNA downstream 98700 1026889 ~ 1046964 (+) True tle2c
XR_006248997.1 other upstream 84279 817333 ~ 836678 (+) True sirt6
XR_006248998.1 other upstream 84279 817333 ~ 836678 (+) False sirt6
TU282180 other upstream 573803 338941 ~ 347154 (+) True G190175
TU282478 other downstream 79987 1008176 ~ 1019425 (+) False chico
TU282479 other downstream 91495 1019684 ~ 1022876 (+) False chico
TU282480 other downstream 91495 1019684 ~ 1022876 (+) False chico

Expression Profile