RNA id: XM_043233528.1


Basic Information

Item Value
RNA id XM_043233528.1
length 3000
RNA type mRNA
GC content 0.44
exon number 5
gene id zmp:0000000521
representative True

Chromosome Information

Item Value
chromosome id NW_025048446.1
NCBI id JAEQBD010000791.1
chromosome length 1202875
location 652741 ~ 661904 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCGCATCGCGGGAGTCGTAGTTTACGCAGGCCGTGCCAGCTTGTTGCCTGACGTCTGGAGGAGCATTATACATGAGGATCTCTGCAGAGGGAAGTCCATCATAGACATGAAAATAGAGGCCAGGTGTGTTTGAGGTTTTGGAAACATGTCCAAGAAAAGGGGCAGGAAGCGCAGCAGCGGCGAGCTGAGCGACAGTCTCACACCGGATCCCAACAACCTGCTGGGCCGACGGATCCAGCACAGCTGGAGGGAGAAGGGCGCTCTGACCAAGTGGAAGGGCACGGTGCTGGACCGCCTCAGCGTCAACTCCTCTCTCTTCATGGTCAAGTACGACGGCTTCGACTGCGTCTACGGCATCGAGCTCTTTAAGGACGAGCGAGTCTCTAACCTGCAGGTTCTCACCGAGAAAGTGGTGAACAACAAGATCAAGGTTCCTCATGACGCAGAGGAGCTGGTGGGAAAAGCCGTGGAGCATCTGTTTGAGAAGGAGGACGGAGAGAAGAACGAGTGGAGGGGGATGGTCCTGTCCCGAGCGCCCATCATGACCAACTGGTACTACATCACGTATGAGAAGGACCCCGTGCTCTACATGTACCAGCTCTGGGACGACTACAAAGACGGAGACCTCCGGATTTTACCCGAAGCAGAGAACAAGCACCTGCTCCCCGCAGACAGGAAGCCCGGCGAGGAAACGGAGAGCCTCGTGGGTAAGCAGGTGGAGTACGTGACGGATAAAGGGGTGAAGAGAACAGGCCTCGTCATCTACCAAGTTCCCGCCAAGCCGTCCGTCTACTACATCAAATACGACGACGATTTCCACATCCACGTGTACGACCTGGTCAAGACCAcctaaacgaaaaaaaaaaacacagacaaaacaaagaaacccGAGACGAACCCACAGCGCTTCACCTCTTCATAGCTTAAGTATCGTCCTCAGCCTCTCGTTGTACAGTCTGCCGTGCCTCGCCGCGAAGGGCTGGCCGTGGAGGTGCTGTGCAAAGCGTCCGTGTACAGGGTTTGTTAGCTTAGGGAGACGATTTTTACAGTTGTCATATCAAAAAAACGGTGTATTTATACATGTGCGTCGGGCGTCATTTGGTATGTTTATATAATCCCATGGAATAGCTTCCGTTCACCCGTTAACCGCGGAGAAAGTCGCGTTTTCGTAATGTACGAATGTTCAAGGTGTTTTGAATTGTAAATAGCACTTggggggggagaaaaaaaagaaaaaagtcacgTCGGAGACATTCGATTACGAATCGTACGGGCGAGACTCTAACTGACCTATTTATTGAACTAATACGCTTCGTAACCCAGAATTGCTGTTAAAACGTTTGGTATCATGCGACGCGTATTGTGGCATATAGTTGCGTTTCCCCCCCCACATCTGCCGTTGAAGAGGGTTGCCCCGTTTCGTCCCGTGTGAAATAATTAACGCTTTACCGTTTGTTTGGTTGTTAAACAGCAGAGGAGCGCTTGTATCCGAACTACAGCTGCGGTTTTTGAATGTCAAGCatagcaaaaatgaaaagggCCTCCCGTTGATTGTAGAGAAGATCGTTGCAAACCCGTTGCAACAATAAGAGTTTATGTAGCCCGGATTTAGTAGGCCTCGGTTTAGAAAACACAAACCCAATCCAGCAGGCTGGATAGACCTGTTAGACCTCTACAAAACACCGTAACATCTGCCTTACTGTGAAATAAATTGGtcttaagtgattttttttttttggatcaaatTCACTATATTTATGCTCATGTTTTTGTCCCAGCCGAACTGAGCAGAGCTTTATGATTTCATgagttttaatgtcattttgatatttttttttttgtcggtTCAACTCATCATTACAGCCCTTTACCGTGATAAAACAGCAGAACAACCGTCTTTTGTGACTCTTTTTGCATCGCTTAGCGCTTTATtgtaaatgctgttcatttctCCGTGATAATTGGCCACCTGTTCGTGACTTTTTTTGCTTGTAGCATTCGCACTTTATTCTTACAACGTCGTCTGTAGCTCCAAAGTGACGTCGATTAAAGTCAAAATGACTTGTTTCAGCTCTTACCCGATAGGCATCGCTAAAACAAACTAATTGGAAGCAATTTCAGTAATTGTGCAACATATTtatgatattatgtgtttttattaaccCAACCccgtatatatttatagcaaacTAAATTGAtcgcattaaatatattattactatgttattatactattattactacCTAAAACTGACTCGTATACGGACGTCTTTGgtcatgtaaatgtaatgcatttaaatgggGATGTCTTATGTAAATGCCGATCTTTTTCTGCTGTgctttgcatgtgtttttggatttttttcttcagtaccTTCGCACAGATTCATTGTGTAGTTTTGTTCTGGTTGGATATTCAGTGTCAAAAACACACCTCgcgtttaatttattttttggaaaaatgtattttttttccacctctGGGCATATTAAATCTTTTGGGCAACCCAGTTTGGGGTCACGGGAAAGTATTGCTCAGtgaaatgcatatttctgtAAACGAACTGCTCTGATTTCAGCTGTTCAcatggattgagtttgtggtccGTTTGCCATCACACCAGGTGGATCGCTCTCTCTGTATATTCTCCattgtgctttaaaaacacttgtaCTATATTTCTGCTTTCCCTGTAGACGAGAGGTTTGATGATTTCGACATGTTCAGGGTTTCATCCTCAGCAGGATTCTGCGGTTTTTTCCTTTCTCATTACTGTGAACGAGTAATTCTCTCTGGCTtctttgtaaatgtgttttatcgTGTGTTCTGCGAGCTTCTGCCGGTTCCTCTGGTTCTTCTATTTAATCCGttcttttgctgctttttacCAAAGTTACGTTTCAGTAGGTGACGTTGAGGAGTGTCGAACTATTCATCCTGTCTGTTTGTGTAATGATGTTATcgtaaataataaaagagatattttttgcactgaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282384 lncRNA upstream 4248 648219 ~ 648493 (+) True G190302
TU282382 lncRNA upstream 6478 645855 ~ 646263 (+) True G190300
TU282380 lncRNA upstream 7355 645159 ~ 645386 (+) True G190298
TU282377 lncRNA upstream 8395 642436 ~ 644346 (+) True G190296
TU282368 lncRNA upstream 33198 618959 ~ 619543 (+) True G190288
TU282400 lncRNA downstream 14719 676623 ~ 681427 (+) True G190311
TU282405 lncRNA downstream 41632 703536 ~ 709464 (+) True G190314
XR_006249003.1 lncRNA downstream 184036 845940 ~ 852752 (+) True LOC122335698
TU282449 lncRNA downstream 197406 859310 ~ 859534 (+) True G190350
TU282452 lncRNA downstream 200511 862415 ~ 864963 (+) True G190353
XM_043233546.1 mRNA upstream 40632 554084 ~ 612109 (+) False LOC122335697
XM_043233547.1 mRNA upstream 40632 555603 ~ 612109 (+) False LOC122335697
XM_043233545.1 mRNA upstream 40632 555605 ~ 612109 (+) True LOC122335697
XM_043233506.1 mRNA upstream 102099 541389 ~ 550642 (+) True rnf126
XM_043233510.1 mRNA upstream 113123 527493 ~ 539618 (+) True twsg1a
XM_043233544.1 mRNA downstream 714 662618 ~ 668191 (+) True hsd11b1lb
XM_043233540.1 mRNA downstream 155429 817333 ~ 834430 (+) False sirt6
XM_043233519.1 mRNA downstream 232224 894128 ~ 907048 (+) True ralbp1
XM_043233515.1 mRNA downstream 244358 906262 ~ 913414 (+) False rab31
XM_043233505.1 mRNA downstream 259053 920957 ~ 928189 (+) True LOC122335651
TU282180 other upstream 305587 338941 ~ 347154 (+) True G190175
XR_006248997.1 other downstream 155429 817333 ~ 836678 (+) True sirt6
XR_006248998.1 other downstream 155429 817333 ~ 836678 (+) False sirt6
TU282478 other downstream 346272 1008176 ~ 1019425 (+) False chico
TU282479 other downstream 357780 1019684 ~ 1022876 (+) False chico
TU282480 other downstream 357780 1019684 ~ 1022876 (+) False chico

Expression Profile