RNA id: XM_043233545.1


Basic Information

Item Value
RNA id XM_043233545.1
length 6462
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC122335697
representative True

Chromosome Information

Item Value
chromosome id NW_025048446.1
NCBI id JAEQBD010000791.1
chromosome length 1202875
location 554084 ~ 612109 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAGATTACGATTTTGAGAACATTCGGACATATACGATCACTGCACGGCGATCTTCTGATGGCAGGTGTGTTTGCTCTCCGGGGCTCCCGAACGCGTTCAACAGGTGTTTAAAGCGGCGTGACCCCGGCGGTCGACCGGAGCTGCTGTAGTCGCGCCGGTGCGCCGGTAGGGGGCGGAGCGCGCTCTGCTCACCGTCACCGAGCGCGTCCTCCGGTGTTATGACATCATAACGCCATGACGACAGCTGCAGTTTTAGACACGCGCAAAAAAAGTGCCAGACTGTTTATGCGACAGTAGTAACTACAAATATTCCAGCCGTCTGTTTGCGCGCGCGACCTCAGCCGTTTATAGATTTCCGCACAGACACAACAGACTCGATCGATCACTTCTTAAGTCAGTGGGACTGCGAAGACGACAGATGAGCAGAACGAAACGTGCTTTTTTTATACGCATGAATAATTTACGTGGCTCTAGTTTCATCGTGCTGTTAAGCGCGTGTAGCAAAAACAACGCGTTAGCttttattttctaatgtttgtattttttttttgtcttgttctcCAAATTTCATCTTTTTCAATATATGGATGCCATCTGCTCgaattatgttattaaaaacactgactGATATGCCGACCCTTTTATTGCTAAATAGCGCGCGGTTGCGTAATGTTACACTGTCAgacaaaaaggtacaaaagctgtccaCCGAGACCTAGCTTTGAAAACCTTACATTATTTGCCACAATAAGCCCGTATTAGTAGCTCACACGAACACATCGATACataaagtgtgcaaagtagtcCCTAAATGGTACATTTAGTAGCTTTTCAAAAGATACCGCCCTGgagacagcttttgtaccttttttctgagTGTAGAAAGTTCATTCTGCAccctttattttagtttttattttattttcagtactgAATTATCACGAACATTGTTGTATCAGAACTGGATTCTCTTAAGGGTTTAAAAACCCCATGACCTTGAACACAAGGCCTGGATCAGCCGAATAACTACTATTAATAAGcctgttattgtttattaatttagctCGAAACGACTGCTTATTTGCTAGAATGACAAAAACAGATAATTACAGGCCAAATCTGATCCGGTGAATGACATGGACCGGAATGAGCTCTCTCCCGGTTCGGATGTTGCCATGACGAAGAAAGCGGCCCATAAGAGCGCGCCGGCGTACCACTGCGCCAAGAGTTGCCTGGAGTCCAACTCGGACGCCGCGGGCTCGAACCTCAAACCCAATCACGTCGTCGCGGAGGAGACAGACGACGCGGAGGAGGACTCCAAGTTTCAGCATCCGCGTCTGAGGAGAGCAGGAGGAGGGAGCAGCGTGCAGATTAAGAGCTGCGCACCGGGAGGAGGAGCGTCCAGGAGCTCCACTTCCACCGATGCGCGCCTGGGTGATGCTGATGCTGCTCCTGCGGGTCGCCACGACACCGTTAAgggcggaggaggaggaggcaaaAGCAAAGCGTCTACCGTAGTGGCCACCGTGACGGTAGAGGCTTGTAATGCTGCCGAGAGCGACGGCAATCCCTCAGCACCGCTTTCCAGCATGAAATGCAACAAGAACGGGGAGTGCAGGCGGGACTCCGGCACCGGGAGCCTCCGGTCCATCATGTCCAAAACCGACGGGAGCAAGCGGGCGGCGTGCAACTCAACGACCAGCGTGGACGCGGCCAGCACGCAGGGGCAGGACGCCTCGAACCCCGGCGTCCCGGAGAAGAAGGATTCCAAAGTGTCCTTTTCCAACGCCCCCAGCAGGAAAGCCTCGTCGTCCATCCACGGCGCGCAGCAGCCCCGCAACTCGGTCACGTTCCTCAAATCCGAGGATGGAGCGCAGGAGGACGGCGAGACGCGGGGCAGCCAGGCGAGCTTCATGCAGCGGCAGTTCAGCAGCATGTTGCAGCCCGGGGTCAATAAATTCTCCCTGCGCATGTACGGGAGCCAGAAGGCGGTGGAGAAGGAGCAGGAGCGCGTCAAATCGGCCGGCAACTGGATCATTCACCCCTACAGCGACTTCAGGTTTTACTGGGATTTCACCATGCTTCTTTTCATGGTGGGCAACCTGATCATCATTCCCGTCGGCATCACCTTCTTCAAAGACGAGACGACCACGCCGTGGATCATCTTCAACGTGGTCTCAGACACCTTCTTCCTCATGGACCTGGTGCTCAACTTCCGCACGGGCATCATCATCGAGGACAATTCTGACATCATCCTGGACCCCAAGACCATCAAGAAGAAGTACCTGAAGACCTGGTTTATTGTGGACTTTGTCTCGTCCATTCCGGTGGATTATATCTTCCTGATCGTGGAGAAGGGCATAGACTCGGAGGTGTATAAGACGGCACGGGCGCTAAGGATTGTGCGCTTCACTAAAATCCTGAGCTTGCTGAGGCTGCTGCGTCTCTCTCGGCTTATCCGCTACATCCACCAGTGGGAAGAGATCTTCCATATGACGTATGACCTGGCGAGTGCAGTGATGAGGATTTTTAACCTGATAGCGATGATGCTGCTGCTGTGTCACTGGGACGGGTGTCTTCAGTTTCTGGTGCCCATGCTGCAAGACTTCCCCTCCGACTGCTGGGTCTCCCTCAACAAGATGGTGAACGACACGTGGAGTGAGCTGTACTCGTTTGCCGTCTTTAAAGCCATGAGTCACATGTTGTGCATAGGTTACGGTCGTCAAGCGCCGGAGAGTCTCTCTGATATCTGGCTGACGATGCTCAGCATGATCGTGGGTGCCACCTGCTACGCCGTCTTCATTGGACACGCCACGGCCCTCATCCAGTCCCTGGACTCCTCACGACGCCAGTACCAGGAGAAGtACAAGCAAGTGGAGCAGTACATGTCCTTCCACAAACTTCCAGCAGATTTCCGACAGAAAATCCACGATTACTATGAGCACCGTTACCAGGGCAAGATGTTCGATGAAGAAAGCATCCTAGAGGAGCTGAACGAGCCGCTTAgagagGAAATCGTGAACTTCAACTGCCGCAAGCTGGTGGCCTCCATGCCCCTGTTCGCCAACGCCGAGCCCAACTTTGTGACAGCCATGCTGACGAAGCTCCGTTTCGAGGTCTTCCAGCCCGGCGACTACATCGTCCGCGAGGGAACCATCGGCAAGAAGATGTACTTCATCCAGCACGGCGTGGTCAACGTGATCACCAAAGGAACGGTCGGCATGAAACTCTCCGACGGCTCCTACTTCGGAGAGATCTGTCTGCTGACGAGGGGCCGTCGCACGGCGAGTGTTCGAGCGGAGACCTACTGTCGTCTGTATTCGCTCTCCGTGGACAATTTTAATGAGGTTTTGGAGGAGTATCCCATGATGAGGAGGGCTTTTGAGACCGTAGCCATCGACCGACTGGACCGCTTGGGAAAAAAGAATTCCATCCTAATGAACAAAGTGCAGCACGACTTAAACTCCGGCATCTTAAACAACCACGAGAATGAGATGATCCAGGAGATTGTGAAGTACGACCGCGAGATGGTGAAGCTGATCGACCTGCAGCGCCCGCGAGCCATGTCCATGACGCCCTCCATCCCCGGCGGGATCTTTGCTCCGCCCGGCCAGTCTCAGGGCGGCAGCTCTGCCATCGCTACTCTACAGCAGGCGGTGGCCATGAGCTTCTGTCCCCAGTTCGGTCCCATGGTGGGTCCCAGCACCATGCAGTCGCCCCGGATGGTCCGACGGTTCCAGGTAGTGCAAAACCTCGCTAGCCCGGTGGCGGTTTCTCCTCAGCAGTCTCAGCTGGGGCTTGGCGCGCTCGCCGGAGTCGCTATGGCCAGTCCGCCGGTTCAAAGCCCGCTAGCGGCGGCAGGCGGACGAACTTTCCAGTACGGGAGCGGCCCGATGGGAGCGCGCTCCGGATCTCAGCTCTCACTCATCCAGCAGCACGTCCCCAGTCCCACGCGTCCCAAAGCAACCCAGCCGTTGCAGCAAGCAGGGAGCCTAACCCAAGACGCCAGGGCCCTGTCTGCTTCCCAACCCTCCCTGCCACAAGATGGCGCTCCGCCCGTCGCTCCCAGCCCGCCACCGTCGACCCGCGTCTCCTCGACGTCGATCGGCCCACCTCAAGCACCCCATCCTGCCATCCCAGGGCCTTCTGGAGTCCGGAGCGCTGTTCCTCAGAGAATGGCTCCGCCTCATCAGGCGCCCGGAGCCGCGGTTGGGAATTACCCGTCTACGCCGCCCCCTACAGGCACCCCACCCGCCGTAGCGGGACCGGACTCGGTTATACGCAAGAAAGATTCCATAGTCAGCCTTCCCGAGACGGACTTCACAGCCAGATCCCGGCTATCGTCCAACCTCTGACGAGAACTCTGAGACTCTTTGCGATACTTTTTGTGAGTCACAGTTCGTTCATTTTTGCGCTCGTAGGGTGGCTTTTCATAGGAACCAAAGGGAGGGCATTCGGACAGACTCGAGGTGTGGTCACATTTAACGAAATTTTGCGGGAGAAGTTAAGTCGTTCCAACGCGATCGGGAGTTTCGCGCACAATTGAATTCACCACGTTGACCAGTGAAGCTGCATGCTTTGAGAGTTCTGCGCTTTATGCATCGCTAAGCTGCTAACGAATTTCGCTGAAATATCGCTGATGTGACCTCACCTTTACCGCTACTAGATTTAACGTCTTCGCTGCGAATAGATTCACGAGGTCGGATGCCTCGCTAGTGTAGCTAGTGCCGCCCCTGTACAGCTTCGGATGCCTCTTAATATATTTGTCTTTATCGTCTCGAGTGGAAGGGAGAAATCCTGTCGTGTGTTACTGTGGTGTTTTCCGTAGAGTTCATACAATGCAATCGGGCGACTAGAAAATCAGGGACTTGCAAGAGATGACAATGACGAGATTTGACGCTTCGCGAAAGTGGTTGGGAACGTCTCCATTCTTTCTGTATAAGCTCTACTTGTAGCAATCGAATTACTTGTCTTTCACTTTGTTgtaaaatatagataaaaaaaaaaaaaaaaaaacgaacaaaaaacaAGTATTATGGACCGCTGGTCGATCTTATAtcttaatgtaaataaagaggtaaaaaagggaaaaaaaaataacttctaaTAGAAAACACGCAAATTGTATTTACTCGAAAACCAAAGTTGAGCTTGAACACAAGTTTTGGTTGTGTCTGTGTCAACTGAGAAAAACAAGTCAAGTTAACTGCCTTGATTCCGAGTTTAGAAGCCATATACATggtctgtgtgtgcgtgcgtgtgtatttGTGCACATATGCTTATTATTCGTTTGATTTATAAAACTGTTTGATCGAACGGGAGTGTAATGCTTGCATTTTTACGTGTCGATAAAGGCAATACTTCACTGCATCGGGATTGCACTGAGAGTCGAGACTTGAATGCAATGGGTCGTTTAAATTAGCAGGCAAACCAAAATaatcatgctgtttttttgtgatCCATGCTGATCTGCACATGCAATATGATTCTGCAATATTCTCGCCCTGCCTTTTATACGAAAGCTTCATATCGCAGCATAAGCAATTTAATCAGCGTTATTCAGAGAATGTTCGAAACCTCGTCTTTTATGGCACTGGTTAAGGTTGCGCAGCTTACGCAATATGGTATGAAATTTCTCCTCGTTTCCTGAAGTTacatgtggtttttttttttgtcactttatgTTTTGGGGGTCTACAGCAGTTTCAGTGACGGAAACGGGTTTTGTAATGCGTTACGGCtctctgtgttattttttattttttttttttattgttgggaAGTACTACAGTCACAATAAATAGAGAAGTCACAATTTCGAAAAGGTTCAAGGTCAGAGAGTTTGGTTATTTCATCGTAGAccttaaaaatgttcatatttcattacaaaaataaaaaagacagtattatctatataatgtaatattattgtaaaaatatgatatcttctatatctatttatttattctatatattttacagttaaacagtgacattttttaacattgccTGTTGTGTTGAAAATAGATCCTGATTTGCACAAATGACTGAGTATCTAAAACATGCTGCATATTAATGGCCTGTAATACAAAGTTTGTGCGTGGGCTCAGTTTGCAGGCCTGTGAGCGCCGGCTGAATCGTTGATTTGTTGATTGCTTGTGAACAGATGTAAACTATGGGGTTGATTTTAACGAACTTGTCTCTTTACAAGAATGTAGTTGTTTGTTTCATTGTCAACTGCTGCAGATTTTTCTCACTTGAACtttgaaaaattgtaaatacgacgctgtaaattattttatgtgcaaACCCGGGCAGTAACAAGAGGACAAGCGATTTTAGAAAACCAAAAAACGAGATCGGTGCATAATGGGTTTTGAATGTATGCCAAGTGGCATTATCGATGTGACCTGAATATTAACAACTGCCATGTAAATAGATCAGTAATAATTCATGCAAAA

Function

GO: NA

KEGG:

id description
K04955 HCN2; hyperpolarization activated cyclic nucleotide-gated potassium channel 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282208 lncRNA upstream 98010 435015 ~ 457595 (+) True G190184
TU282164 lncRNA upstream 123817 294272 ~ 431788 (+) True G190168
TU282192 lncRNA upstream 179965 372953 ~ 375640 (+) False G190181
TU282193 lncRNA upstream 179965 372953 ~ 375640 (+) True G190181
XR_006248995.1 lncRNA upstream 290669 264053 ~ 264936 (+) True LOC122335680
TU282366 lncRNA downstream 3097 615206 ~ 618727 (+) True G190286
TU282368 lncRNA downstream 6850 618959 ~ 619543 (+) True G190288
TU282377 lncRNA downstream 30327 642436 ~ 644346 (+) True G190296
TU282380 lncRNA downstream 33050 645159 ~ 645386 (+) True G190298
TU282382 lncRNA downstream 33746 645855 ~ 646263 (+) True G190300
XM_043233506.1 mRNA upstream 4963 541389 ~ 550642 (+) True rnf126
XM_043233510.1 mRNA upstream 15987 527493 ~ 539618 (+) True twsg1a
XM_043233507.1 mRNA upstream 29317 480508 ~ 526288 (+) True ankrd12
XM_043233508.1 mRNA upstream 29317 480509 ~ 526288 (+) False ankrd12
XM_043233552.1 mRNA upstream 78123 471853 ~ 477482 (+) True ndufv2
XM_043233528.1 mRNA downstream 40632 652741 ~ 661904 (+) True zmp:0000000521
XM_043233544.1 mRNA downstream 50509 662618 ~ 668191 (+) True hsd11b1lb
XM_043233540.1 mRNA downstream 205224 817333 ~ 834430 (+) False sirt6
XM_043233519.1 mRNA downstream 282019 894128 ~ 907048 (+) True ralbp1
XM_043233515.1 mRNA downstream 294153 906262 ~ 913414 (+) False rab31
TU282180 other upstream 208451 338941 ~ 347154 (+) True G190175
XR_006248997.1 other downstream 205224 817333 ~ 836678 (+) True sirt6
XR_006248998.1 other downstream 205224 817333 ~ 836678 (+) False sirt6
TU282478 other downstream 396067 1008176 ~ 1019425 (+) False chico
TU282479 other downstream 407575 1019684 ~ 1022876 (+) False chico
TU282480 other downstream 407575 1019684 ~ 1022876 (+) False chico

Expression Profile