RNA id: XR_006248995.1


Basic Information

Item Value
RNA id XR_006248995.1
length 681
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC122335680
representative True

Chromosome Information

Item Value
chromosome id NW_025048446.1
NCBI id JAEQBD010000791.1
chromosome length 1202875
location 264053 ~ 264936 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTCCTTTACCTGGCCACAAGCATGCTCGTACCTCATCCGTGGTTAACAGAATGAAGTCTTTTCCTGTATCATCTTTCTCAGGTTCTACACTCCAGGGAATCCTAGAAAGAACGTCGGCATTGATGTTTTGTCTTCCAGGTTTGTAACAAACCTCAAAGTTGAATTCTGATAACTGAGCAACCCAGCGCTGCTCCACTGCTCCAAGATTGGCTGTTTCCAGGTATCGGAGGGGATTGTGGTCAGTGACTACTTGAAACTTTGCAAACATCAGAACCCTTCAGACCACGGCTCGCATAGGCGACGACACGCTCTATACCCCCCTGCTTTTGGCTGAGGATCGCTCCAAGTCCATTGCGACTCCCATCCGTCGTCAGTATGAACGGACACTGGAAATCAGGAGCATGCAAGGGCTTTGCCAGCTGTGCAAACCTCGGGACAAAACGGCGGTAGTAACTCATAAATCCCAACAGCTGTCTGACTTCTCTAACATTTGTTGGCTTAGGCCATGCATCCAAGCACTGTACTTTGTCCATATCCACTTGAATTCCCTTCACTGAAATTATGTGTCCTAAGAACCTGACTTCTGGCTTAAAGAGGAAACATTTACTGGGCTTCAGTTTCAGGCCGTGTTGACGTAACCTTGAGAACACAAGCTCCAGTCTTTCACAATGAGACTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282153 lncRNA upstream 21681 239480 ~ 242372 (+) True G190164
TU282151 lncRNA upstream 25012 191506 ~ 239041 (+) False G190162
TU282093 lncRNA upstream 124176 137144 ~ 139877 (+) True G190118
XR_006248993.1 lncRNA upstream 235190 25608 ~ 28863 (+) True LOC122335677
TU282073 lncRNA upstream 243680 16675 ~ 20373 (+) True LOC122335676
TU282164 lncRNA downstream 29336 294272 ~ 431788 (+) True G190168
TU282192 lncRNA downstream 108017 372953 ~ 375640 (+) False G190181
TU282193 lncRNA downstream 108017 372953 ~ 375640 (+) True G190181
TU282208 lncRNA downstream 170079 435015 ~ 457595 (+) True G190184
TU282366 lncRNA downstream 350270 615206 ~ 618727 (+) True G190286
XM_043233542.1 mRNA upstream 12161 244409 ~ 251892 (+) True rab12
XM_043233548.1 mRNA upstream 27529 158203 ~ 236524 (+) True LOC122335699
XM_043233550.1 mRNA upstream 27529 158203 ~ 236524 (+) False LOC122335699
XM_043233549.1 mRNA upstream 27529 158203 ~ 236524 (+) False LOC122335699
XM_043233551.1 mRNA upstream 27529 158203 ~ 236524 (+) False LOC122335699
XM_043233552.1 mRNA downstream 206917 471853 ~ 477482 (+) True ndufv2
XM_043233507.1 mRNA downstream 215572 480508 ~ 526288 (+) True ankrd12
XM_043233508.1 mRNA downstream 215573 480509 ~ 526288 (+) False ankrd12
XM_043233510.1 mRNA downstream 262557 527493 ~ 539618 (+) True twsg1a
XM_043233506.1 mRNA downstream 276453 541389 ~ 550642 (+) True rnf126
TU282180 other downstream 74005 338941 ~ 347154 (+) True G190175
XR_006248997.1 other downstream 552397 817333 ~ 836678 (+) True sirt6
XR_006248998.1 other downstream 552397 817333 ~ 836678 (+) False sirt6
TU282478 other downstream 743240 1008176 ~ 1019425 (+) False chico
TU282479 other downstream 754748 1019684 ~ 1022876 (+) False chico

Expression Profile