Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU282208 |
| length | 796 |
| lncRNA type | inter_gene |
| GC content | 0.38 |
| exon number | 2 |
| gene id | G190184 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NW_025048446.1 |
| NCBI id | JAEQBD010000791.1 |
| chromosome length | 1202875 |
| location | 435015 ~ 457595 (+) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0009063 | cellular amino acid catabolic process | biological_process |
| GO:0009078 | pyruvate family amino acid metabolic process | biological_process |
| GO:0009080 | pyruvate family amino acid catabolic process | biological_process |
| GO:1901605 | alpha-amino acid metabolic process | biological_process |
| GO:1901606 | alpha-amino acid catabolic process | biological_process |
| GO:0046395 | carboxylic acid catabolic process | biological_process |
| GO:0042851 | L-alanine metabolic process | biological_process |
| GO:0042853 | L-alanine catabolic process | biological_process |
| GO:0044282 | small molecule catabolic process | biological_process |
| GO:0042594 | response to starvation | biological_process |
| GO:0031667 | response to nutrient levels | biological_process |
| GO:0006522 | alanine metabolic process | biological_process |
| GO:0006524 | alanine catabolic process | biological_process |
| GO:0009991 | response to extracellular stimulus | biological_process |
| GO:0016054 | organic acid catabolic process | biological_process |
| GO:0005102 | signaling receptor binding | molecular_function |
| GO:0005179 | hormone activity | molecular_function |
| GO:0030545 | receptor regulator activity | molecular_function |
| GO:0048018 | receptor ligand activity | molecular_function |
| GO:0098772 | molecular function regulator | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU282164 | lncRNA | upstream | 3227 | 294272 ~ 431788 (+) | True | G190168 |
| TU282192 | lncRNA | upstream | 59375 | 372953 ~ 375640 (+) | False | G190181 |
| TU282193 | lncRNA | upstream | 59375 | 372953 ~ 375640 (+) | True | G190181 |
| TU282150 | lncRNA | upstream | 136184 | 217938 ~ 298831 (+) | True | G190162 |
| XR_006248995.1 | lncRNA | upstream | 170079 | 264053 ~ 264936 (+) | True | LOC122335680 |
| TU282366 | lncRNA | downstream | 157611 | 615206 ~ 618727 (+) | True | G190286 |
| TU282368 | lncRNA | downstream | 161364 | 618959 ~ 619543 (+) | True | G190288 |
| TU282377 | lncRNA | downstream | 184841 | 642436 ~ 644346 (+) | True | G190296 |
| TU282380 | lncRNA | downstream | 187564 | 645159 ~ 645386 (+) | True | G190298 |
| TU282382 | lncRNA | downstream | 188260 | 645855 ~ 646263 (+) | True | G190300 |
| XM_043233542.1 | mRNA | upstream | 183123 | 244409 ~ 251892 (+) | True | rab12 |
| XM_043233548.1 | mRNA | upstream | 198491 | 158203 ~ 236524 (+) | True | LOC122335699 |
| XM_043233552.1 | mRNA | downstream | 14258 | 471853 ~ 477482 (+) | True | ndufv2 |
| XM_043233507.1 | mRNA | downstream | 22913 | 480508 ~ 526288 (+) | True | ankrd12 |
| XM_043233508.1 | mRNA | downstream | 22914 | 480509 ~ 526288 (+) | False | ankrd12 |
| XM_043233510.1 | mRNA | downstream | 69898 | 527493 ~ 539618 (+) | True | twsg1a |
| XM_043233506.1 | mRNA | downstream | 83794 | 541389 ~ 550642 (+) | True | rnf126 |
| TU282180 | other | upstream | 87861 | 338941 ~ 347154 (+) | True | G190175 |
| XR_006248997.1 | other | downstream | 359738 | 817333 ~ 836678 (+) | True | sirt6 |
| XR_006248998.1 | other | downstream | 359738 | 817333 ~ 836678 (+) | False | sirt6 |
| TU282478 | other | downstream | 550581 | 1008176 ~ 1019425 (+) | False | chico |
| TU282479 | other | downstream | 562089 | 1019684 ~ 1022876 (+) | False | chico |
| TU282480 | other | downstream | 562089 | 1019684 ~ 1022876 (+) | False | chico |
