RNA id: XM_043233510.1


Basic Information

Item Value
RNA id XM_043233510.1
length 1098
RNA type mRNA
GC content 0.47
exon number 5
gene id twsg1a
representative True

Chromosome Information

Item Value
chromosome id NW_025048446.1
NCBI id JAEQBD010000791.1
chromosome length 1202875
location 527493 ~ 539618 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATGCTAAGCGCCGCTCTGCTGACTTCTTCCATTTCTATGAATCAAAGCCGCTCATGTTTCTATTCAGAGTAAAAGGAGCCAAGACAAGAGATCCGCATGAGAGAAAGTCAAAAACCAAAGGAAAGTGTTGAGAACGCTTCAAAGTTATACAGTGTGTGGAGTTTGGGTCAGGATGCGGCCGGCTCTGTTCCTCTGTCCCGTCCTGATCTCTCTGTTATTTCTTCTGTCTGGACTGACCGTCATCAACGGCTGTAATAAAGCTCTGTGTGCCAGCGACGTCAGCAAATGTCTTCTTCAGggtcTGTGTCAGTGCCGGCCGTCGGAGGGAAACTGTTCGTGTTGTAAGGAGTGCATGCTGTGTTTGAGCTCTCTGTGGGAGGAGTGCTGCGACTGTGTTGGAATGTGTAACCCCAGGAATTATAACGACAGTCCAGCCACCTCCAAGAGCACCGTAGAGGAGCTGTACCGGCCAATCCCATCGCTCTTCCGCGCTCTCACCGAAGGAGACGCCCCTATCAACATGATGGTCGTGTCGTTCCCCGTCGCTGAGGAACTTTCTCACCACGAGAACCTTGTGTCTTTTCTAGAGACTCTGGACAGCCAGAGCCACAACATCTCACtgcccagcagcagcagcgttcATGACGATGCCTTGTGTACGGTGGTCTACTTTGATGACTGCGTGTCCATCCGTCAGTGTAAGCAGTACTGCGAGTCGATGGGAGGATCAAAGTACCGCTGGTTTCATAACGCCTGCTGTGAGTGCATCGgccctgaatgtctggactatGGCAGCAAAGCCGTCAAATGCATGAACTGCCTCATCTGAGCCCAACACTGACTTCACACACTTCATctgctgttttattgtataaaacacATCTGATGATTTCTGCTCTTGTTTACAGATCTTGTTTCTTATTCTTGTCTTTTGGAAAAATAAGGTCAAGGGTGTTTTTTGTAAGTTATCAatactgtttttgaattattacaGCAGCATGTAGAGGACATTTCTCATTCAAATCATATTCCATCTGTATATAGTTCTCATTTCGTATTCATATGTctggtttcattaaaaactaaagtaaactGTT

Function

GO:

id name namespace
GO:0001568 blood vessel development biological_process
GO:0005576 extracellular region cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282208 lncRNA upstream 69898 435015 ~ 457595 (+) True G190184
TU282164 lncRNA upstream 95705 294272 ~ 431788 (+) True G190168
TU282192 lncRNA upstream 151853 372953 ~ 375640 (+) False G190181
TU282193 lncRNA upstream 151853 372953 ~ 375640 (+) True G190181
XR_006248995.1 lncRNA upstream 262557 264053 ~ 264936 (+) True LOC122335680
TU282366 lncRNA downstream 75588 615206 ~ 618727 (+) True G190286
TU282368 lncRNA downstream 79341 618959 ~ 619543 (+) True G190288
TU282377 lncRNA downstream 102818 642436 ~ 644346 (+) True G190296
TU282380 lncRNA downstream 105541 645159 ~ 645386 (+) True G190298
TU282382 lncRNA downstream 106237 645855 ~ 646263 (+) True G190300
XM_043233507.1 mRNA upstream 1205 480508 ~ 526288 (+) True ankrd12
XM_043233508.1 mRNA upstream 1205 480509 ~ 526288 (+) False ankrd12
XM_043233552.1 mRNA upstream 50011 471853 ~ 477482 (+) True ndufv2
XM_043233542.1 mRNA upstream 275601 244409 ~ 251892 (+) True rab12
XM_043233550.1 mRNA upstream 290969 158203 ~ 236524 (+) False LOC122335699
XM_043233506.1 mRNA downstream 1771 541389 ~ 550642 (+) True rnf126
XM_043233546.1 mRNA downstream 14466 554084 ~ 612109 (+) False LOC122335697
XM_043233547.1 mRNA downstream 15985 555603 ~ 612109 (+) False LOC122335697
XM_043233545.1 mRNA downstream 15987 555605 ~ 612109 (+) True LOC122335697
XM_043233528.1 mRNA downstream 113123 652741 ~ 661904 (+) True zmp:0000000521
TU282180 other upstream 180339 338941 ~ 347154 (+) True G190175
XR_006248997.1 other downstream 277715 817333 ~ 836678 (+) True sirt6
XR_006248998.1 other downstream 277715 817333 ~ 836678 (+) False sirt6
TU282478 other downstream 468558 1008176 ~ 1019425 (+) False chico
TU282479 other downstream 480066 1019684 ~ 1022876 (+) False chico
TU282480 other downstream 480066 1019684 ~ 1022876 (+) False chico

Expression Profile