RNA id: XM_043233506.1


Basic Information

Item Value
RNA id XM_043233506.1
length 2497
RNA type mRNA
GC content 0.45
exon number 9
gene id rnf126
representative True

Chromosome Information

Item Value
chromosome id NW_025048446.1
NCBI id JAEQBD010000791.1
chromosome length 1202875
location 541389 ~ 550642 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCGTACATCGCCTCGTTCTCGCTTTCAGTCGGTCCTGCAGCGAAGATGGCGGAAGCTCCCCCGCGGCCCTGCCGGTTCTTCTGTCACCGGTGTTCGGAAGAGATCAGCCCTCGGCTCCCGGATTACATCTGTCCACGGTGTGAGTCCGGCTTCATCGAGGAGTTGCCTGAAGAGGGAAGTTCAGAGAACGGGTCCACATCCACATCCTCTAACGATCAGAACCGGCCCTCGTTTGAGAATGTGGACCAGCACTTGTTTACGTTCCCGCACGGTTACGGCCAGTTTGCTCTGGGGATCTTTGATGAGGGCTTCGACTTCAGAGCCGGTCTGCCAGCGGAAGACAACCGCGATGCAGAGAACCGCAGAGAGCGGGAAATGGCCTCGCGACAGCGCTACGGGGCCCGACAGCCACGGGGACGACACGTTCCCCGGAGGCAAGGAGTGCGGCATGAGGGGGTACCCACTTTAGAAGGaatCATTCAGCAGTTAGTTAATGGAATTATTGCTCCGACAGCTATGCCAAACATGGCGATGGGGCCTTGGGGAATGCTGCACTCAAACCCAATGGACTATGCATGGGGTGCCAATGGATTAGATGCCATCATAACACAGTTATTAAATCAGTTTGAAAATACGGGTCCACCTCCGGCAGACAAAGAGAAGATTAAGAGTCTCCCTACAGTCCAGATAACACAGGAACACGTGGGTGCCGGTCTAGAGTGTCCTGTCTGTAAAGAAGACTACAGCGCAGGGGAGAACGTTAGGCAACTTCCCTGCAATCATCTCTTTCATAACGACTGTGTAGTTCCCTGGCTCGAGCAGCATGACACATGTCCGGTGTGCAGGAAGAGTTTGAGCGGGCAGAACACAGCCACGGATCCGCCCGGCCTATCAGGCATGAACTTCACCccctcgtcctcctcctcttcctcctccagcTCTCCGAGCAACGAGAATGCCACCAATAACTCGTAAGAGCTCAGCTCGCACCCCAAACACATCTacacatcagcagcagcagcagcagcagcatcatcatcatcatcatctcagcCGGACACACACTCCTTCCCTCCACCAGAGACCGATGGGTGACACGGTGGAGCCGGCGCTGAACCTGCCCATCactactaacacacacacacagacagacagacagacagacagcgctGAGAGCACGCCAAACCCCCTCCTCCTCCCCGGAGAGAGAACAATACACTCTCCCACCGCTTCAGACAGCCtttacttgcttttttttttttttttttttttaaaccgctGAACTTCATTCCTCAAGGTTCGGGCGCACACGGCGGGCGGCACCTGTCCGCGTGACCTTCTTTTAATCAGCAGAAAGCGTGAGGAGAAAGTGCTGAGGAAAAGAGAGACGGAGGAAGAGGATGTTACGAGCTGCGCGATGACGGACGCACAGAGCTGAACTGCATTTTTAGAAGCAGACTTTGTGTCTCTGCAGAGGGACGCGCGCGGTCAGATACaacctttagtttttttttttatccttcggtttttattttactgattaAAAGCGGCTGATATGTGAACGTGAGTATGGGTGAATCTCGCAAAACCGCTCAAGGTCACGCCTCACCCCAAGatcagaagaaaagagaaatgcGTATTAAGCCCGTTTTAGAACCACCGAGAACTTTTGAATACGATTTAGAAATTTTACGTCACTTTCTCATTACAGTAATATGAAAAAgaattaaatcatatttcatagATTATTTTGTTAGTTGCACCGCCTTTTAATTTGATAAgtcattacagtattttatattgtaatactacattacagtaatgagaatcaTCTGAatcttgtaaataaatgcttcattgtcattaaatacaatacttttttttttttttttttttttttgtcgttggGGTTTAATAAAACctggatgtgtttttttgtgattcACCCATATATATGAaacatatttattgaataaaataaaataagagctGCGTCATATTGTGAAAAGCCAAGCGATCCAAGAACATCTGTGACTGAGGAAAACACTGAGTGCAGGTTTCTCtcctaatatttatttgcacagtatttttttttttttttttttttttttgcgaggATGATTAGAACATTGAACAAACAGAAAAgcgtgaatgtttttttttttttttttcttggcaaCATTTGATATGATTTTCTACATTTAGCATCGTCCTTaaaaatcaggagagaaatatattttctctatttttttggGCTTTTATCCAAACGGCACACGGCCGAGAACGTGATAAGAGCTCTCTTGCTTtctcttactcttttttttttttttttttttttttttttattaatatttttaaatctcctCGCGTTCAGTTGTCTTTCTCTCGGTCTGCCACACATATTCAGTGACTTTCAGTTCaaggcaacttttttttttaacttattttaagttaaatggtttgtttttgtaaatcataataaaggagaagaacaaa

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282208 lncRNA upstream 83794 435015 ~ 457595 (+) True G190184
TU282164 lncRNA upstream 109601 294272 ~ 431788 (+) True G190168
TU282192 lncRNA upstream 165749 372953 ~ 375640 (+) False G190181
TU282193 lncRNA upstream 165749 372953 ~ 375640 (+) True G190181
XR_006248995.1 lncRNA upstream 276453 264053 ~ 264936 (+) True LOC122335680
TU282366 lncRNA downstream 64564 615206 ~ 618727 (+) True G190286
TU282368 lncRNA downstream 68317 618959 ~ 619543 (+) True G190288
TU282377 lncRNA downstream 91794 642436 ~ 644346 (+) True G190296
TU282380 lncRNA downstream 94517 645159 ~ 645386 (+) True G190298
TU282382 lncRNA downstream 95213 645855 ~ 646263 (+) True G190300
XM_043233510.1 mRNA upstream 1771 527493 ~ 539618 (+) True twsg1a
XM_043233507.1 mRNA upstream 15101 480508 ~ 526288 (+) True ankrd12
XM_043233508.1 mRNA upstream 15101 480509 ~ 526288 (+) False ankrd12
XM_043233552.1 mRNA upstream 63907 471853 ~ 477482 (+) True ndufv2
XM_043233542.1 mRNA upstream 289497 244409 ~ 251892 (+) True rab12
XM_043233546.1 mRNA downstream 3442 554084 ~ 612109 (+) False LOC122335697
XM_043233547.1 mRNA downstream 4961 555603 ~ 612109 (+) False LOC122335697
XM_043233545.1 mRNA downstream 4963 555605 ~ 612109 (+) True LOC122335697
XM_043233528.1 mRNA downstream 102099 652741 ~ 661904 (+) True zmp:0000000521
XM_043233544.1 mRNA downstream 111976 662618 ~ 668191 (+) True hsd11b1lb
TU282180 other upstream 194235 338941 ~ 347154 (+) True G190175
XR_006248997.1 other downstream 266691 817333 ~ 836678 (+) True sirt6
XR_006248998.1 other downstream 266691 817333 ~ 836678 (+) False sirt6
TU282478 other downstream 457534 1008176 ~ 1019425 (+) False chico
TU282479 other downstream 469042 1019684 ~ 1022876 (+) False chico
TU282480 other downstream 469042 1019684 ~ 1022876 (+) False chico

Expression Profile