RNA id: XM_043233519.1


Basic Information

Item Value
RNA id XM_043233519.1
length 4570
RNA type mRNA
GC content 0.45
exon number 11
gene id ralbp1
representative True

Chromosome Information

Item Value
chromosome id NW_025048446.1
NCBI id JAEQBD010000791.1
chromosome length 1202875
location 894128 ~ 907048 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCGCATGCGCGCGTGTCAGATGGGACGTAAACAAGCTACAGGAAGTGCAGCTGTTACGTTGATCACAGCAGgTGACATGAAGAGGTGACAATAGCGGGACGGCGCAGAGATGACGGAGTGCTTCCTGCCACCCAGTAGCAGCCCTGCGGAGCAGAGGAGGGCGGAGCATCCCGGGGGCGTGGCTCGTACCCCGAGCTCTGAAGAGATCAGCCCCACTAAGTTCCCAGGTCTGTACCGTACGGGCGACCCTTCGCCCCCTCACGACGGACACCACCATGAGCAGCCCGACGTGGCATCCGATGACGAGAAGGAGCACAACAAGAAGAAGAACAAGTTTAAGAAGAAGGAGAAACGCACCGAGGGATACGCCGCGTTCCAGGAGGACAGTTCTGCCGATGAGGCCGAGAGCCCGTCTAAGATGAAACGCTCCAAAGGTATCCACGTCTTCAAGAAGCCCAGTTTCtccaagaagaaagaaaaggacTTCAAAGTGAAGGAGAAGGGGCCCAAGGAGGAGAAGGCTAAGGACAAGAAGTCCAAAGACCTGACGGCAGCCGACGTCGTGAAACAGtggaaggagaagaagaagaagaaaaagcccAGCGCCGAGCCCGAACCCGTCGTCACGGAGACGGCGGCGGCGCTCCGGCCGATCTTCGGAGCGCCGTTAGCGGAAGCGGTGAGGAGAACGGCGCTGTACGACGGGATACAGCTCCCGGCCATCTTCAGAGAGTGTGTGGACTACATCGAGAGCTACGGCATGAAGTGTGAAGGCATCTATCGCGTCTCTGGTATGAAGTCAAAGGTCGATGAGCTGAAAGCAGCGTATGACCGCGAGGAGTGTCCGTGTCTGGAGGAGTATGACCCTCACACAGTGGCCAGCCTGTTGAAGCAGTACTTGCGAGAGCTGCCTGATAACCTGCTGGGCAAAGAGCTGGCCCCGCGTTTCGAGGAGGCCTGCGGGCGGCCCAGCGAGGCGGAGAAACTGCAGGagtttcagaggctcctgggggaGGTTCCTGTGGGGAGCAGACTCATCCTGGCCTGGCTCATTACTCACATGGACCACGTCATCGCCCGCGAGACAGACACCAAGATGAACATCCAGAACATCTCTATTGTGCTCAATCCCACCGTACAGATCGGGAATCGCGTGCTGTACGTGTTTTTTACTCACGTCCGCGAGCTGTTCGGTGATGTGGTTCTGAAGCCGGTCGTCCATCCTCTCCGTTGGTCCAATATGGCCACCATGCCGACCCTACCTGAGACCCAGGAGAGCATTAAAGAAGAGATCCGCAGACAGGAGTTCCTCTTGAACCGTCTGCACAGAGATCTGCAGGCCGGGGTGAAGGATCTGTCCAAGGAGGAGAGACTCTGGGAGGTGCAGCGGATCGTCACCGCTCTGAAACGCAAGCTCCGCGAGGCCAAGAGACAGGAGTGCGAGACTAAAATCGCGCAGGAAATCGCCAGCCTGTCTAAAGAGGACGTGTCAAAGGAGGAGATGTCTGAGAACGAGGAGGAAGTCATTAATCTTCTCCTGGCACAGGAGAATGAGATCCTCACAGAGCAGGAGGAGCTGATATCGCTGGAGCAGGTGCTGCGTCGGCAGATCGCCACAGAGAAAGAAGAAATAGAGCGCCTGCGTGCCGAGATCGCGGATATACAGAGCCGCCAGCAGGGCCGCAGTGAAACAGAGGAGTATTCATCAGACAGCGAGAGCGAGagtgaagatgaagaggaactGCAGATGATTCTAGAAGACCTGCAGAAACAGAATGAAGAGCTAGAGAATAAAAACACTCATCTGAATCAGGCCATCCATGAGGAACAGGAGGCCATATTGGAACTGCGTGTTCAGCTCCGCCTCCTTCAGAGTCACAAGCTTCAGCAGGAGCACACATCCCCGCCCACTTCTGAACAGGCCCCGCCCTCCCAGCCCAGCCCAGAGGAACGATCTAGAGGACGAACCAATCAAACGAGCCGCAGCGGTCGCCATGGAACCCCTGCCGCCGCCGCAGCTGCTGCCACCCCAGCCAACGGGAAGCCTGGGAAAGATGCCATGAAGCCATCGCCTAGCAAAGACAAGAGGGAGGCCAACCTGTAAACCATCCGACCGTCACCACACTTGCACTTCTGTATGCTCATCACGTAACTGTGACGtctgggtcaaaggtcagcaaGGTGAAGTGAGATGGTCATTACACTGGGAGAAAACTGGACAGCGGAGATGTGATTTGTAGGTCGGAAATGAGGCGAGTACGGGAAACATTCCTGATTGGTCATCATCACAATGGAGTGAAATTGCATTCTTTTGACACGTTTAAGTTCGTATGTGAAATTGCAGCAGCACAATCAGATCTTTGGGAGTGCTCCGATTCAATCTGCCCTTTGACCCATCTAAACACACAggctcattttcttttttctaaacAGTTAAGAGTATTAGGGGGCCCAaggttgttaaaaaaaagtgaagatcATTTGTCCAGGTAAATTTTTGCTccaaaatcagaagaaaaattatattaaattatattatattttgcattaagaaaattaagccgccggatttttttttgcattctaaCATAATTTACGTTACTATTAAGCACTGTTCTACATAATTGCCATTACTTTAATTGCAGAAATGCAGATTAAAATTTAAACCAAGTGCAAAGTGTTCTTAATAGTCATTTAAttgtcacaatgcaaaaaaaaaaaaagttcatttaaacatatatatttttcagttttgggttAAAATATATAGAGCCCATTTCCATTGAAgtgtaattgcaacttttcatctcacactattttttttgcaataaaaatagggtcagaactgtgagatataaattcagaattctgcctttttttttttttttttttcttacaattttgAGTTTACATCTAATGATTCCTTTCTTGCGATCTGCTTTTTTCCTCAGGATTTGAAATCAGCATTTCACaacttcttttcttcttttttcaccACGAAAAAAAATACGATTCAGTTGCGATTTCTTGATCTCAAAATTCTTGCGGTTACTGAAATAGAGTTTTTATAGACAAACTCGAggataaaagatgaaaaagttGCGATtacctttatatttattacacatcACGGCGTGAGTGGGCTTTTACGCAGATGTTTTCTTAAGATTCACCtgaataattcatgcatttCGAGAAACGGCAAGCTGTAAAAGGATGTTATGACACAACACTTAATTACTTCCTGTGTAAAGCTCCAAACCAAAGGCGACGAACATCCGTCTCTTCTATACTCGCGTTACATTCGGTGCAAAAACAATCATTTCAGACAAGTACGTTTGCTTTATCGGTTATcgttaacaaatgcattttatttatacagttctGCTCATAGTTAAATCGCAAAGGAGTAAATGCGTTGAGAAACATCCTGGATGTTTGTTGCCAGTGCAGAAATGAGAGGACAAGAAATCATAATGGGCTCCTATTGTGGGTCCAGGTCTAGAACAGCgattaaactgaatgaaaataaagttgtgtgttttctgaaaccACTGTGccataggtgtgtgtgtgtgtgtgtgtgtgtgcagccgCACTGAAGAATTACTTTGAAGATGCTCTGGGACATTGTGATACAACgagattgtatttttttttttttttcctattaagATATTCCAAGGCGACGGTTtagaacatttattataaatttcgATATTTAATAATCCTATATAAACATCTAATCTGTAACCGCACTAGACCGTGCAGATCTGCACTTATGGAAGGGAACGAGTCGAGTGCCGTTTGTGGTGGAGTTGTTGGTTTCCGTACGTtcgcacgttttttttttcgttttttacaAATTTCGTGAAGCACAAGAATATTTTTGATCAGCGATGAAGTTCGAGTGGTCATTATGGGTGGTTTTAATAAGCGTTGGTGGTCCGAATCGAAGAAAAGAGACACTGCATGAAGTAAATGGTGCTTCTGTTCGAAAGCGAGCTTCGTTTTCTTTTTCgcagaatatcttcttttttgatTCGTGGTGAAATATGAACTCTTTTTGAGAGATCCTCCTAGCCGCTCCTGAAGTTTTGGCACAGTTGTTACAGATGTTCTGACACACTGTTCGATAGTCATTTTGGAAACTTGCACTAGATTgtcaccatttttttaatttttttttttttttgatacaaaTATTCTGTCAGGTTCATTTTGTGattgttatatttgtttaaagtgCTTGTTGAAATACTAGTGTACTactggattattattattattattattattactcccTTTCAGATAACACATTTCCTCCctcattttgcttttcttttccttttttgtgcTGTCGAATTGCATTTCAGAAATACTGTAGAATTCTAATCAAGAGCTgttatgtatgtaaaaaaaaaaaaaaaagatctcaaaGAGATACGTGCCCGCTCATCTACTTTTGGAAATTATAGTTTTTCATGTTATAAACAAAGCTTTTGTAGCTCCTGATCATTGTGAACAGAATGCTgccatctaaaataaaatgataggTTGGACAGTAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K08773 RALBP1; RalA-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282452 lncRNA upstream 29165 862415 ~ 864963 (+) True G190353
TU282449 lncRNA upstream 34594 859310 ~ 859534 (+) True G190350
XR_006249003.1 lncRNA upstream 41376 845940 ~ 852752 (+) True LOC122335698
TU282405 lncRNA upstream 184664 703536 ~ 709464 (+) True G190314
TU282400 lncRNA upstream 212701 676623 ~ 681427 (+) True G190311
TU282468 lncRNA downstream 1103 908151 ~ 914067 (+) True rab31
XR_006249000.1 lncRNA downstream 29970 937018 ~ 945525 (+) True LOC122335692
TU282476 lncRNA downstream 67213 974261 ~ 1052949 (+) False G190366
TU282475 lncRNA downstream 141051 1048099 ~ 1052949 (+) False G190366
TU282477 lncRNA downstream 142302 1049350 ~ 1053122 (+) True G190367
XM_043233540.1 mRNA upstream 59698 817333 ~ 834430 (+) False sirt6
XM_043233544.1 mRNA upstream 225937 662618 ~ 668191 (+) True hsd11b1lb
XM_043233528.1 mRNA upstream 232224 652741 ~ 661904 (+) True zmp:0000000521
XM_043233546.1 mRNA upstream 282019 554084 ~ 612109 (+) False LOC122335697
XM_043233505.1 mRNA downstream 13909 920957 ~ 928189 (+) True LOC122335651
XM_043233517.1 mRNA downstream 67525 974573 ~ 1007421 (+) True gna11b
XM_043233518.1 mRNA downstream 73771 980819 ~ 1007421 (+) False gna11b
XM_043233522.1 mRNA downstream 101102 1008150 ~ 1022881 (+) True chico
XM_043233523.1 mRNA downstream 101102 1008150 ~ 1022881 (+) False chico
XR_006248997.1 other upstream 57450 817333 ~ 836678 (+) True sirt6
XR_006248998.1 other upstream 57450 817333 ~ 836678 (+) False sirt6
TU282180 other upstream 546974 338941 ~ 347154 (+) True G190175
TU282478 other downstream 101128 1008176 ~ 1019425 (+) False chico
TU282479 other downstream 112636 1019684 ~ 1022876 (+) False chico
TU282480 other downstream 112636 1019684 ~ 1022876 (+) False chico

Expression Profile