RNA id: TU282468


Basic Information

Item Value
RNA id TU282468
length 1771
lncRNA type sense_over
GC content 0.39
exon number 6
gene id rab31
representative True

Chromosome Information

Item Value
chromosome id NW_025048446.1
NCBI id JAEQBD010000791.1
chromosome length 1202875
location 906262 ~ 914067 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTAGATTTGGGAAGAAGATGGTCAGAGTTTGTGTTTTGCGGACGAACAGTCCCCTGTGACCGTGATGGACGAGAGTCGACAAAACAAGGCCGGAGACTGTTAAAAGTATGCTTCAGCTGCCTTAACGTACTTCACAATGGCCATCAGGGAGCTGAAAGTTTGTCTGCTCGGGGACACAGGCGTGGGGAAATCAAGCATCGTGTGTCGTTTCGTACAAGATCACTTCGACCACAACATCAGTCCAACGATAGGtgcatcttTTTAACTAAGACAGTCCCCTGTGGAAATGAACTTCACAAGTTTCTGATCTGGGACACTGCAGGGCAGGAACGaGACTCTTTCCAGACGTTGAAGAAGTGGGTGAAGGAGCTGAAGGAACACGGGCCGGAGGATATAGTCGTGGCTATAGCAGGAAATAAAACCGATCTGGGAGATATCAGgGAGGTTCCAACTAAAGAGGCAAAAGATTTCGCAGAGTCAATTGCAGCCATATTCATGGAGACCAGTGCCAGAAATGCTGTAAACATAGAGGAGCTGTTTCAGAAAATCAGTCGACAGATCCCTCCGCTGGAGAACACAGACGCCGACAGCCACGAGTCCTTTAAACTGACACGACAGCCTCCTCCCTCCAGCAGACGCTGCTGTTAGACATCACTACAAACACCCTACAACATGATGGTATTTGACCCATGCGATACCTAGACGAGGATCGCACGACTGATAGACGTACAGGAAACAAAGCAATTCTGCCTAACAACCGTTTCATACCAAGTCGGAATATGGCATTGACACGAGAGTTATCGCCACGTGGAATCGTTTCGcttaaaaagcctttttaaatgcagaattgtgacaaataaaaacgcTAGTAGTTAGCACAAAGTTTACACAAGAATAAGTGCCTTTAGAAAACGCCATTTTTATGTTTGGCATTGCCGTTTTGATACGTAAAACGTTTTAAAGAGGTTAATGTGGCTTTATTTGACCACTTACGATGAAGTCTAGAGGAAAGAAAGACGTTCGCTGGTGTGTCGGTCACACTTCGTATTACAGTGtttattgtattatgtatttacataccACTAGTGCTTCGTACTAATAAAGTGTGTGTTAAGTATGCTGCTTGTAAGTGCACGcagtaattgtttttattataataattattattaggacGTTGCCAATTTATTcatcctaaaaataaattacggttattggttaaaatgtaggtaacactttacaataaagtgtcatttgttaacattagttaatgtattaacggAGATGagcaaacaatgaacaatgcatctgaaataatatttattcatcttcgTTAACATTAGCTAATGAAAAATGCATCGTTTATTCGTGTTTTTTCACAGCGCGTCAACGGATGTCATCTTGcgattttaataaagcaaagtaaatgctgaatttttttcattctcatgtttactaatgttgttaacttattgtaaagtgttacacaGACTTTTTACGTTTactattaaatgaaaattaggaGAGGAGACACCAGGGGGCACAATTGTCTCTAAAGTGAACACATTTCCGTTATTTTGCAATCCTCTGCTTACCTGTTGCTgccagtgttaaaaaaaaaaaaaaaaaaagctcaattgTATTTTTcctattgtattttttttttaatttgtaaccAACAAAATTGTGTTCCTCTGTTAAACAGGTACACTTGTTATCCTATCACTAAGTTTGCAAATAAAACGAACAAACCATAACTAGGTTAATTTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282452 lncRNA upstream 43188 862415 ~ 864963 (+) True G190353
TU282449 lncRNA upstream 48617 859310 ~ 859534 (+) True G190350
XR_006249003.1 lncRNA upstream 55399 845940 ~ 852752 (+) True LOC122335698
TU282405 lncRNA upstream 198687 703536 ~ 709464 (+) True G190314
TU282400 lncRNA upstream 226724 676623 ~ 681427 (+) True G190311
XR_006249000.1 lncRNA downstream 22951 937018 ~ 945525 (+) True LOC122335692
TU282476 lncRNA downstream 60194 974261 ~ 1052949 (+) False G190366
TU282475 lncRNA downstream 134032 1048099 ~ 1052949 (+) False G190366
TU282477 lncRNA downstream 135283 1049350 ~ 1053122 (+) True G190367
TU282474 lncRNA downstream 136090 1050157 ~ 1104473 (+) True G190366
XM_043233519.1 mRNA upstream 1103 894128 ~ 907048 (+) True ralbp1
XM_043233540.1 mRNA upstream 73721 817333 ~ 834430 (+) False sirt6
XM_043233544.1 mRNA upstream 239960 662618 ~ 668191 (+) True hsd11b1lb
XM_043233528.1 mRNA upstream 246247 652741 ~ 661904 (+) True zmp:0000000521
XM_043233547.1 mRNA upstream 296042 555603 ~ 612109 (+) False LOC122335697
XM_043233505.1 mRNA downstream 6890 920957 ~ 928189 (+) True LOC122335651
XM_043233517.1 mRNA downstream 60506 974573 ~ 1007421 (+) True gna11b
XM_043233518.1 mRNA downstream 66752 980819 ~ 1007421 (+) False gna11b
XM_043233522.1 mRNA downstream 94083 1008150 ~ 1022881 (+) True chico
XM_043233523.1 mRNA downstream 94083 1008150 ~ 1022881 (+) False chico
XR_006248997.1 other upstream 71473 817333 ~ 836678 (+) True sirt6
XR_006248998.1 other upstream 71473 817333 ~ 836678 (+) False sirt6
TU282180 other upstream 560997 338941 ~ 347154 (+) True G190175
TU282478 other downstream 94109 1008176 ~ 1019425 (+) False chico
TU282479 other downstream 105617 1019684 ~ 1022876 (+) False chico
TU282480 other downstream 105617 1019684 ~ 1022876 (+) False chico

Expression Profile