RNA id: XM_043233523.1


Basic Information

Item Value
RNA id XM_043233523.1
length 3396
RNA type mRNA
GC content 0.43
exon number 7
gene id chico
representative False

Chromosome Information

Item Value
chromosome id NW_025048446.1
NCBI id JAEQBD010000791.1
chromosome length 1202875
location 1008150 ~ 1022881 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCGTAATTTGGCGTCTTGCATCACATGAGAGCGTCCATACGAGTCCTGAAGCGGCGGAAGAGGCATGATTTTCCAAGCCCAGGCTGCTCTTTCACCGCCTTTAACCAGACAGACGCAAGGCTAGCGAACACACGGCCGCATTTAGACGATTTCCCCCCCGTTTTGACGCGCGTTTTGCAAATCCCCTGCGTCGCAAACTTATCTATTAGCTTTAGCCGCGTAGCTTGCGTTTGGAAATTGGACAAGTATGATCAGCCCGGCTGTGGATTAATCGGCCTGTTTCGACAGAAGATTCGTTTTTCTCCGGTGAAACCGCAATGTCGCATACCGTAGCAGAGCTAGCCTGCTCTTTTCGTTATTCCAAAAGCAGAGCCGTCTGAAGTCGATGTAGGTTTGCAAAGCCGAACAAAAATCCAGGGAAACTGGAGATCGCGGCCAGGAAATCTGTTCAGGAGAGCAGACTATAGCCTTCAAACTCATCGGTTTAGACCAAATCGAGGCCGAACAAAGAGGACACCCATCCAAAGCCTTCTCGTTTCATCTTCAGAGAGAgaataaagcacaaaaacagGCTGATATGATGTTTCCACAAGCCAGGCACTCGGCTTCGTCTCAATCGACACAGCCGCTCAAATTCACCACGTCTGACTCTTGTGATCGCATCAAAGATGAGTTTCAGTTCCTGCAGGCACAATATCACAGTCTGAAGTTGGAATGTGATAAACTGGCGAGCGAGAAATCTGAAATGCAGCGTCATTACATAATGTATTACGAGATGTCGTACGGACTCAACATCGAGATGCACAAACAGGCGGAGATCGTGAAGAGATTGAATGGAATCTGTGCTCAGGTGTTGCCTTACCTGTCTCAAGAGGTCAGactgtCATTGTGTAGGTCCTGGAAGATTATTGAGAGAGCTAATAAAACAGGTATCTTTCCTCCTGAGATGAACTCAATTATTCGGCAGCTTCAGGTTCACCAGCTCTCTCAGCTTCAGGGTTTGGCGCTACCCATGACCCCTCTGCCCCTGGGCTTGACTCCGCCCACCCTGCCCGCCGTCACCTCCAGCTCCGGCCTCCTGTCTCTGTCCAGCATCCTCGCGTCTCACGCTCACCTGGCCAAGGAGGACAAGAGCTCCCGCGACGGGGCCGAGGGCCACCGCGACGACGACGCCGACAAATCCGACTAGCCTTCATAGAGACGCTATGATTCTACACAGAAACAGAGGCACAAACTACTCCTCCTGTCTCACTGggtctgatctctctctctctctctctctctgtctctgtctctctctctctctctctctctctctctctctctctgtctctctctgtttgattcatttccttttgattagtggtgtttgctaaggctctattattattattgctcataGTTGGGGTTAGTGATTCGAACAAACCCCTATCCCTAAGTATTCATCTTCAGCATGTGACATACCTCAAGTCGTGTGTCTTGTTGAGGAGAAGTGTATTATTACTGTTAGTgacttttgatttttaatttttttttttttccctctggcagacaaaataaaatgagtggGAAATCCTATAGATACTAACAGAGACGCCCAAACCGTATCCAGAGACCTGATTAATTCACCCAGAATGCAAAGATCTAGTAACTGCATGCTCGGCCTCAATATATCCCGTCATATTCTATTCCAGTTAAGAGTTTTAACACTCTCTAGTGAGCCTTTCACGGCACTGGATTAAACGTGTTTTGCATAAAAAGACGACACTCCCGTATCGCTCTCAGAAAGGTGTATATGCCTTGTGAAGTGCGTGTCGGACGGTGACCGGCCTGGGGACAGTTCTGACCGCAACAAAGAGTTTTTCCTACTTCAGACCCACATCCTCGAGtcatttctgcttgtttttctgtttgcagTGAATGTGTTTGAACGCGTGACCAGCAGGTGGCAGCCAGCGAGCGTGTGTTGAATGATGCGTGCCgctgtactactactactacagcAGTGCTTCTCAGTACCTTGATTCAGTgcgtttttagcattttagttaATACCAGGTTACTGTTAATGATGTTATTAGGGCCTAAAAAGGCGGTTTAGTCAATCGAGGGGactaaaaagcatttcaatttaattattattaataccaaAATAATAACCAATTAAAccgaaatgcataaaaaaacgaTTGAAATTAGTTTTATGATATTGTAGTAATAAATAATCGAAAAATACaggaattaaacatttatttttccctcTCGGTAGCtgtttttcactgaaattttaaaacgcagtttacagtagggtctcatttattaataatagttaatgcattaactagcATGACGAACGACGTATAGTTATAGCGAAGATTAAGATTAACAAGTATTGTTCCGGTTAACTAATCTTAACAAAtgaaaccttattgtaaagcgtcACCAATATATCAGTGCTCACGGTTTGTCTTTATACAAGCTTTGTCCTAATTTTAGCCGCTTTCCggaataacctttttttttattttaaatgtgcgtCCCTTGATTAATCAATCAGTTAATGAGACTGAAGAGGTCACCCCAGTGTAGCATACAGTACATACTGCCTAGTTAGTAGTATGCTAGTATTCCTGGCTGGTTTATAGACTACCTAAAGTTGTACATATGCACGGGTGCATTGTGGGTATTTTCTAAGCGTGTGTTCCTGGACATCTATCTCTCGTGTCCCATGTTTTTcttcgtttagtttttttttcccgtatGCCGAGAAGCGCTCGCCGTCGATTGCTCGTTTTAATCTCGAAACGATGTTTTCCGATTTCCAtcgtttagatatttttcactCGAGCTCGAAAACCGACGGCCAATTTAGTCACGCGTATAAATATACcaatacacatttaattttgtatacattttttgtatgtataaagCTACGTTTATGTTGTATGTGGCCCGGAGGACACTTAGCGCAGGTTAAACCCCGATCTACGATCAGTTAATGTTTCACGTCAAACACTTTGGCTCTGGTTTGTTTAAACGCGCGTAGCACTGGCCGGTGTCGACTAGTCATGGTTTCTTAAAAGGTGACGAAAATCCAGACACGAGCGATACCCGAGGCCTCCTTCTTCTGATGGCTCTCGTCCGATATTTGCCACATTTTGGAGCTTTGTAGTAGTTTTTTAAGacgtgtgtgtgggtgtgcgtgcgcgtgttgATGTGATATGACGTACTTGATGGAAATGtatgttgtttgtgtttataaacaGCTATTATAACTTCATTTAAAGATGATTGTTGGAAGAAAAAGGTTAAAACATTTACTATGAATGAGAGATTGAGCAGTAAGGAAGTATTTATGGTGCCTTACAAATAAAAGATTCATTGGACCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006249000.1 lncRNA upstream 62625 937018 ~ 945525 (+) True LOC122335692
TU282468 lncRNA upstream 94083 908151 ~ 914067 (+) True rab31
TU282452 lncRNA upstream 143187 862415 ~ 864963 (+) True G190353
TU282449 lncRNA upstream 148616 859310 ~ 859534 (+) True G190350
XR_006249003.1 lncRNA upstream 155398 845940 ~ 852752 (+) True LOC122335698
TU282475 lncRNA downstream 25218 1048099 ~ 1052949 (+) False G190366
TU282477 lncRNA downstream 26469 1049350 ~ 1053122 (+) True G190367
TU282474 lncRNA downstream 27276 1050157 ~ 1104473 (+) True G190366
TU282600 lncRNA downstream 157940 1180821 ~ 1181264 (+) True G190443
TU282602 lncRNA downstream 158581 1181462 ~ 1181721 (+) True G190445
XM_043233517.1 mRNA upstream 729 974573 ~ 1007421 (+) True gna11b
XM_043233518.1 mRNA upstream 729 980819 ~ 1007421 (+) False gna11b
XM_043233505.1 mRNA upstream 79961 920957 ~ 928189 (+) True LOC122335651
XM_043233515.1 mRNA upstream 94736 906262 ~ 913414 (+) False rab31
XM_043233519.1 mRNA upstream 101102 894128 ~ 907048 (+) True ralbp1
XM_043233531.1 mRNA downstream 4008 1026889 ~ 1046964 (+) True tle2c
XM_043233530.1 mRNA downstream 4014 1026895 ~ 1046964 (+) False tle2c
XM_043233532.1 mRNA downstream 4022 1026903 ~ 1046964 (+) False tle2c
XM_043233500.1 mRNA downstream 101203 1124084 ~ 1175611 (+) True scn12aa
XR_006248997.1 other upstream 171472 817333 ~ 836678 (+) True sirt6
XR_006248998.1 other upstream 171472 817333 ~ 836678 (+) False sirt6
TU282180 other upstream 660996 338941 ~ 347154 (+) True G190175

Expression Profile