RNA id: TU282452


Basic Information

Item Value
RNA id TU282452
length 2549
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G190353
representative True

Chromosome Information

Item Value
chromosome id NW_025048446.1
NCBI id JAEQBD010000791.1
chromosome length 1202875
location 862415 ~ 864963 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttgttttgaaacttttttttttatttacaacgaGTCATATACAGTTCAGCAAAGCGAACCATTTCTCCTTGAAAATGACACATCGCTTTCAAATTTCCTTAAAGAGAGTCATTGTGTGGATGATTGTGTTTAGACCGCATTCAGCAGCATTCATTCAGCGATGATAAACAAACTCCactgttcaaatgtttcaaGGACAGTTTAGACAGTTTCTCTCCTCGTGGCTTTTTCCTCTGAAGGTCCGCAAAGCTCATTCGATATTTTCCCaaaaagacagaataaatgCTCGATTTCCAACCCCGAAGCTCAGCTCTTGGAAACGCTGCGTATACATGGAGACGTCGGTTGCTTGAGATGTTTGGGATGGTTTTAACAACAATGATAGAATCTATCACTGTCTCACGTCACATTAGCAGTCGAGAGTTTGGACACACTTTGTAATTTCTCATAATAACTGTTGCCAGCGTTTTACAATAAAGAACCCCACATTTTTGGTGCCCTCAGAAAATAAGTTATTGTAGTTGATGTGACACAATATGCGATATGAtaaagctacatttaaaataaaataaaaaaatgatttacaataACAACTGTGGAAATGTGCAATCACGTCTATGAAAAGAGTCGATAAAATAGAAGTGTGTGAATTAAAGAAGGGCAATAATGCTTTTACATTAATATCTGCTTCAGTTCagtcattaaatgaaaatacattacataaattaattgcattttgagtcattttttcACCATAAGACTTTTTTACCCTCGCTTAAGAAATGTTTCCGTTAACTTGAAGTTTTTGAGTCCAAGTGCGTCCAAACTTTTGTCTAGTAATGCACATGTATTATACGCGCAGTGCAATTCTGTTTCAGCGATGTCTGATGTTTGCCAATCCGCGTCGCAGAGGTACGCAGAGATGTATTTTAAAGTCGAAACGAGTCACGGAGTTTTTCCTCGCGGATAACGCGTCACATCCCGATCTCCATCTGCACCACGGACACCGCAGGTGGAGCCTCCGCCACCTTTTTCCCCCGGTACACGAGCTTGGCCAGGTTCCGGATGGACGGAGTGGCTCTAAATAGCAGTTTCTTGAGGCCGGTGCGGTACTCCTGGCGGATCAGACAGTACAGCACCGGATTCAGGCAGCTGTTTGTGTGCGCCAGGCACACGGTGATGGGGAACGCGTAGGCCTGCGCGTTGTAAAACGCGTTGCTGAACGGCACCAGGTCGAATTTGatgagcaccccccacagggtCAGAGCCTGGTTGGGCAGCCAGCACAGAAAGAACGACAGAACCACGATGGTGACCGATCTGGTGACTTTGGATCGGCGCTTGTGCCgtcctctctcgctctccgAGCCGGGAATCCCGCTGACGCGCCGCCGCAAAACGAAGCGCAGCAGGAGCAGGTAACAAACGCAGATGATGACCAGCGGAATCACGAAGCCCAGGAGCACCTTTTGGGTTTGATACAGACCCAGAAGCAGCTGCGGGTCCCAGCTACCGGAATCCGAGAAGCGCACGAGGCACAGCTCGTCGTCGGACACCTGCGCCGTGGTGGAGTAAACCGCGTGAGGGATGGTGGCCACCACGGACACGATCCAGATTCCCAAACTGGCCCACTTGACCTCTGCCGAGGCCGTTTTGGGACTTTGCATCCGCAGGGACGAGGACAAGGAGCAGTAGCGCGCAACGCTCATGGCCGTGAGGAAGAACACGCTCGCGTACATGTTCATAGTGGTGACCGAGCTGATGATCTTGCACATGACCTTTCCAAACGGCCACCTGAAGTCCAACGCGGTGTCCACGGCCCAGAACGGAAGAGTCAGGACGAACTGCAGGTCCGTCACGGCTAGACTCATGACGAAACAGTTGATGGACGACTGCTTGAGTCTGTGGCGAGACTGGAGCAGGTAAAGCGCCAACAGGTTCCCGACGAGCCCCAGAGCGCACACGATAAGATAGACGAGAGCGATCACGACGCGCATGGCCATGCTCGAGCTGTCGCCGTAGAGCTCCGGCGCGGATTCTTTGGAGAGCAGCTGCAGCCAGCAGCGGAGAGACAGGTTGTGGAGAGCGGTCCGGTTCGACAGCGCATCGCCCTCGTCCAGCGCCGGTCCGCACGCCGCCAAACCCGGTGCCAACGCGCTGCTGTTCCCCTGCATGGCACGGCTTTACGCGCCCATACGATTACTATAAAATTCCATGTGCTGCACAAGTGCGTTCATAAAAGTCATCCCACGGGTGCAGAGTGTGATCGTCATGCGCGTAAACTCTTTATTCCTGCTTTAAAGCGCGGTCTTTGCGCGAATCTGAGCAGAAGACGCTCCTCTCTCCTCTGACTCTCCGCACCTGAATGAGCTCATGGAGCACCACCAGGCTTTATATAAGGGAGGCCGTCTGCTGTCGCATGGGGGACGttttcaaaaatactgtaatttatttttatttaacctgTAAAAGCTGTATAATATAcgtttggataaaagcatctgccagaTGAATACATGTATATTCAACAAATGCTTACTTTAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282449 lncRNA upstream 2881 859310 ~ 859534 (+) True G190350
XR_006249003.1 lncRNA upstream 9663 845940 ~ 852752 (+) True LOC122335698
TU282405 lncRNA upstream 152951 703536 ~ 709464 (+) True G190314
TU282400 lncRNA upstream 180988 676623 ~ 681427 (+) True G190311
TU282384 lncRNA upstream 213922 648219 ~ 648493 (+) True G190302
TU282468 lncRNA downstream 43188 908151 ~ 914067 (+) True rab31
XR_006249000.1 lncRNA downstream 72055 937018 ~ 945525 (+) True LOC122335692
TU282476 lncRNA downstream 109298 974261 ~ 1052949 (+) False G190366
TU282475 lncRNA downstream 183136 1048099 ~ 1052949 (+) False G190366
TU282477 lncRNA downstream 184387 1049350 ~ 1053122 (+) True G190367
XM_043233540.1 mRNA upstream 27985 817333 ~ 834430 (+) False sirt6
XM_043233544.1 mRNA upstream 194224 662618 ~ 668191 (+) True hsd11b1lb
XM_043233528.1 mRNA upstream 200511 652741 ~ 661904 (+) True zmp:0000000521
XM_043233547.1 mRNA upstream 250306 555603 ~ 612109 (+) False LOC122335697
XM_043233519.1 mRNA downstream 29165 894128 ~ 907048 (+) True ralbp1
XM_043233515.1 mRNA downstream 41299 906262 ~ 913414 (+) False rab31
XM_043233505.1 mRNA downstream 55994 920957 ~ 928189 (+) True LOC122335651
XM_043233517.1 mRNA downstream 109610 974573 ~ 1007421 (+) True gna11b
XM_043233518.1 mRNA downstream 115856 980819 ~ 1007421 (+) False gna11b
XR_006248997.1 other upstream 25737 817333 ~ 836678 (+) True sirt6
XR_006248998.1 other upstream 25737 817333 ~ 836678 (+) False sirt6
TU282180 other upstream 515261 338941 ~ 347154 (+) True G190175
TU282478 other downstream 143213 1008176 ~ 1019425 (+) False chico
TU282479 other downstream 154721 1019684 ~ 1022876 (+) False chico
TU282480 other downstream 154721 1019684 ~ 1022876 (+) False chico

Expression Profile