RNA id: TU282384


Basic Information

Item Value
RNA id TU282384
length 275
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G190302
representative True

Chromosome Information

Item Value
chromosome id NW_025048446.1
NCBI id JAEQBD010000791.1
chromosome length 1202875
location 648219 ~ 648493 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGcatgcatgattttttattatttttgtgcgtATAAGTGTGTTCAAGGCAGTACAATGATTATGCAAGTGTGTCAAATATGCCATGATCCTTCTGCAAATAAACGGATAAATCATCTCGTGGTGGCAAAACAATTACACAGTTTATCCATCGCGATGCTCATCTTCATCTCAGATGGCTGGAGGGTGAGTATTTTCATCAAATGCtattttttgagtaaactattcCTTCACTATTCCTGTTTTCTTGGTGGTTGAAATGCTGTCATATTCCAG

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282382 lncRNA upstream 1956 645855 ~ 646263 (+) True G190300
TU282380 lncRNA upstream 2833 645159 ~ 645386 (+) True G190298
TU282377 lncRNA upstream 3873 642436 ~ 644346 (+) True G190296
TU282368 lncRNA upstream 28676 618959 ~ 619543 (+) True G190288
TU282366 lncRNA upstream 29492 615206 ~ 618727 (+) True G190286
TU282400 lncRNA downstream 28130 676623 ~ 681427 (+) True G190311
TU282405 lncRNA downstream 55043 703536 ~ 709464 (+) True G190314
XR_006249003.1 lncRNA downstream 197447 845940 ~ 852752 (+) True LOC122335698
TU282449 lncRNA downstream 210817 859310 ~ 859534 (+) True G190350
TU282452 lncRNA downstream 213922 862415 ~ 864963 (+) True G190353
XM_043233546.1 mRNA upstream 36110 554084 ~ 612109 (+) False LOC122335697
XM_043233547.1 mRNA upstream 36110 555603 ~ 612109 (+) False LOC122335697
XM_043233545.1 mRNA upstream 36110 555605 ~ 612109 (+) True LOC122335697
XM_043233506.1 mRNA upstream 97577 541389 ~ 550642 (+) True rnf126
XM_043233510.1 mRNA upstream 108601 527493 ~ 539618 (+) True twsg1a
XM_043233528.1 mRNA downstream 4248 652741 ~ 661904 (+) True zmp:0000000521
XM_043233544.1 mRNA downstream 14125 662618 ~ 668191 (+) True hsd11b1lb
XM_043233540.1 mRNA downstream 168840 817333 ~ 834430 (+) False sirt6
XM_043233519.1 mRNA downstream 245635 894128 ~ 907048 (+) True ralbp1
XM_043233515.1 mRNA downstream 257769 906262 ~ 913414 (+) False rab31
TU282180 other upstream 301065 338941 ~ 347154 (+) True G190175
XR_006248997.1 other downstream 168840 817333 ~ 836678 (+) True sirt6
XR_006248998.1 other downstream 168840 817333 ~ 836678 (+) False sirt6
TU282478 other downstream 359683 1008176 ~ 1019425 (+) False chico
TU282479 other downstream 371191 1019684 ~ 1022876 (+) False chico
TU282480 other downstream 371191 1019684 ~ 1022876 (+) False chico

Expression Profile