RNA id: XM_043233518.1


Basic Information

Item Value
RNA id XM_043233518.1
length 5919
RNA type mRNA
GC content 0.42
exon number 7
gene id gna11b
representative False

Chromosome Information

Item Value
chromosome id NW_025048446.1
NCBI id JAEQBD010000791.1
chromosome length 1202875
location 974573 ~ 1007421 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTACGGTGGTTTCCATGGCCAGTGCAAACAAGAGGATTTGCACTTTGGACTTCCACCTAGCAGGCACTGGCGAGAGCGGCAAGAGTACGTTCATCAAACAGATGCGTATCATCCATGGTGCCGGGTACACAGACGAAGACAAACGCGGCTTTACCAAGCTGGTGTACCAGAACATCTTCACCTCCATGCAGGCCATGATCCGCGCCACAGAGACCCTGAAAATCGGCTACAAGTATGAGCAGAACAAGGCGAACGCCATGCTGGTGAAAGAGGTGGACATTGAGAAGGTGTCGTCATTCGACCATCCCTACATTAATGCCATTAAGATGCTGTGGTCAGATCCAGGCATTCAAGAGGCCTACGACAGACGCAGAGAGTACCAGCTGTCCGACTCCACAAAATACTATCTATCTGATCTGGATCGTATCGCCGACCCCTCCTACCTTCCGACCCAGCAGGATGTTCTGAGGGTTCGAATCCCGACCACAGGGATTATCGAATACCCATTCGACCTTCAAAGCATCATTTTCAGGATGGTTGATGTagggggtcagaggtcagagcgCAGGAAGTGGATCCACTGTTTTGAGAATGTGACGTCCATCATGTTCCTGGTGGCTCTGAGCGAGTACGATCAGGTTCTGGTGGAATCGGACAACGAGAACCGTATGGAGGAGAGTAAGGCTCTGTTCAGGACGATAATCACATATCCATGGTTCCAAAACTCTTCTGTCATCCTCTTCCTCAACAAAAAGGACCTGCTGGAGGAGAAGATCTCCTACTCCCACCTGGTTGACTACTTCCCAGAGTTTGATGGGCCCCAAAGGGACGCCCAGGCCGCACGAGAGTTCATCCTGAAGATGTTTGTGGATCTGAACCCCGACAGTGACAAGATCATCTACTCGCATTTCACCTGCGCCACCGACACGGAGAACATCCGCTTTGTGTTCGCGGCGGTGAAAGACACCATCCTGCAGCTAAACCTGAAGGAATACAACCTGGTGTGAGACGTGCGACAAGCCCGACACATGAATCAGCATCGAACAGGCACCCACAGAGCGTGCGCACACCTATGTccacacaccccacacacacacacacacacacacacacacgcatcatGTACACTATAAGAAACATGGTTCTTTTGATTTCTCTTTCCCGGCTTCCAgagtttttctctttctgtccaGCGGAATCGTAACGGGCCTGTCCTGCTCGTcgttagttttgttttttatttgtttgccaaAGTCTGTCCGCTCATCCCCAGCAGCTCTCGTCAAAGGCCTCTTTCCCTTTTATCAAATTTGACCACCGACGTTAAGCGGCTCGGATTTGACAAAGGGCGTTAGACTCGCGTTCATGGGAATGTCCGATCGGCGAAGCTACGACGAGAACGATCTGCGATACGCTGGCCTGAAAAAATGGAAGCGACGTTCCTTCCCCTTTCCCGTACTGTCGCTCGCTCTTAATCTGCTCCGAGCGTTTCTCGGGAATCCTGCCTGGATGAACGGAAAAACGTGGTTTTCGCAGCCctgcaaaaagacaaaaaaataaaaataaaatcacaatatatttacatacttgTACATGGACACATGGACTAGTGCTGTGGTGCCGGAAGTTCCGAAACGGATCCTTCTAGAATTCCGAAGATTCCGGCGGATTCTGTAATCCAGTGGGTTCCACTGATGGTGTGGAGAACCTTTCACTCGCGGAGATGATTCTCTTTTTGACGAGGCTAGTCTTCAACTTGCATCGATGAATGTAAACTTCACGTGAGAGCATcgcaaatgcaaatgcaaaaaaaaaaaaaaaaaaaaaaacggcgtcaaaaaaaatcctaaaaaatacaaaaaaaaaacagataatgaACGAAAATAGTGTAAGAATGCCTATATAAGCGAAACGATACAAAGCACGCAAGGGAGAGATGAAACTTATTAAATCTGTGTATATTGCTGagatgatcattttaaaaactttttaatgataaGTAACTATAGCTACTTCTACTGCTATCgaatataaagtaaattataACAGCAGTCGAATTATTGATGGGTAAGAGACAACGTTAAGGATTTTTAAATGTGCGCAAAACAGGATTACACATTTCCGATAGGTATTGTTCTGCAGATTTCCACATTTAACGTTGAAAATGATTGCATTGCTTCCCCCCCCTTCGTGGTTACGTTTTATCCTCCTTCCTGGTTTTCGTTTTAATTTCGCAATCTAAAAGAAATAGTTTCAGAGTGCGCGATTTATCTTTCTCCGCTCATGAACAGATACTTTATTAATTCACGATCCAGGCCGTCGTTGTCTAGCGGCACGGGTGCTCGCGATCCATTATTTGTTTACGCAGTTCGTTTTTAATTGTCACGACGTAACtttttttcggtcgacgatttcTAGAATTTCGCTCGATTTCCGGTGGGGTCGCGGGGAGGACGGGGTCGGCGGCGGGGGACGGGAAAGCATTTATGCGCTGAAGTTAATtgattgtgtatatttatatttgtaaatacgTATACACATTATTGCTTATGTACAAAACGTCTGTGGTACACTATctttggcaaaaaaaagaaaaaaaatcactttttcgTAATTGTGTACGGTTCTGTTGGTTTTCTTAtgaattacaatattattgatACTGTGattctttgttttgatttttcttttttggtcacTATGAATACGTCAAATGATAGACGCGTAGCTTACGGTAACGTGCGGAGGACGGACGTGATGAGCAATAGTCTAGAGCAGActttggagggaaaaaaaaaaatcggaaaCTTCGGAGACGGATAGGGATACAGCCTCCTCCGTGGTGTGAAtgttatataacataaaaaataaaaatatgatttttaagtaaaaaagacattaattaaataaaggacgttttatttatataatttatggaCCAGATCTGAAGTTGTTGATAATTTGAATGCTATTGTTTTCTCTTTCCTATTTGAAGCACTCCCATGTTATGAGACAGAAATAGGAGACTAGTGTCTGTACTGCTGTATAAACCTCCGTTATGGATAAAattatcagctttttttttttttttctctttctctattttAATTTTCCCCCCAAACACACGATATATCGTACTACAAATATTTTCCCTAACcacacttttcactttttttttttttttttgtaattattgttgAAATTTCCAAGTGACGTTTAGGTGAAgtgcttaaaaacaaacataggAAATGTACCATATGAAAATAGACAGCTTTTTATCTGTTATTGAAGATCTGTTTGGTCGACGCTTACGAGTAGCGACTTTTtctttcgattttttttttctttatcgaTTCACAGCTCGTTTCCTTCATTGTGTACGTGATGCAcagatagagagaaaaaaaaaagtgttctacGGTTCTTTTGCAGTCGATATTTTATACAGGtgatgtttcattcattttcatcaaGGGCTACGAAAAACGCGCCACATGAAAACCAGAAACGATCGTTCACGGCTCTGAGCGTGATTCGGTTCCCGGGGAGAAACGGCGTCAGAAATGCGCCCCTTCCGCCGAACGCTCACGCATTAATCGTTATTTTATCACTTTTGCCGTCGTGCGTCGGGGTTCGGCGCTCGCCGCGGTCATCGAACTCCCGAACGCTTTCGCGGTGGATGTAAAACCTGACGTGTTATTTGTAAACCGAACCCTTATCATTCAGTGTTTAAGTGGGGTTTGGAAAATCCCGCCATTTAGTAAACGAAGTATTCGAAGAAACCGATGACGCCAACCGAGCACTAAATCTTCTGAAATGCCATCTTTTTGATGTACATCTCGCTCTCTGAAGCGTTCGAGTGAAACTTGGTGACTGTGGAGTTGATGTCTGCTCACTATGAAAACGTCTTGCTTCGTTTTATCAAGCCGTCGATTGTAAGACCAGAAGGGGGGGAGCGTTATTCGCCGCAGCTTAATTCTtattaatgcactttttgttttttgttttccgtGCCACGAGGCAGATGCTTCCAGCTGCAGGCCGACTATTCGAGCTACGCATATCTATAAATGTGCCAGTCCCAGAAGTCCCGTATTCGACGTTCCCTCGAGAACCTCTACCTCTGTGAACCGTGagacttcttttgttttttcggGCATTTTAGGATCGGTGGTCATGCGACGAGCACGCTTTTTAGTCCGTGGGGGCGCGGTCGGTGAGGTTTGAAGGCCAAACCTTGTTCGTTTGTTAGATCTCGCCAACGAGAACGGCAAAAACCAACCTTTCTCAGGCCAAAACGATCTTCCTAAAAGGTCCGCCGTGTGGTACGTTAAAAATAGCGCCTATCCCGTGGCATCCGTTTTCGGTTTTGCAGCAGATAAGTGAATAGACATATCAGTTATAAAGGCTTTGGCTGTTCCGGGTGACGGTTTAGTTACAATTTAGGCTAGAAAATAccgtatttaaatgcataaatgcttgACCAAAGCATTGTTGATAATCTTCGGCACTCAAGAGGGCGCTAGAGTTTCCTTCAAATGTCTGTGCCATTACACCGGATGTTATTATTGCAGAAAAAGAAGATTGGCTATGGATGTTGCCAATGTCACCGTGTTCACTTTCGACTCGGAAAAAAATCAATCGTACGCGTTCCTATCTTTCTCTAGCGCGCATAAAAGAAGTCTCCGGGAGCGTAAAATGAGGCCGCTCGCCTTTTCGAGTTCTGTGTTTGATTTCTCCTGGTGGTTGCGATTCAGCTCGATGACTCTTTGCACTTGTGAGACTCTCTTGGTGAGACGTAAGCTTATTGACATGGAGTCAGATTTGCCAGGCCACTGCGGAGCGAGACGATTGATACGTTTACTGGTACGGTTTTGGCGCATCTGTGCGGTCCAATGGCTGACGTCCTGACCCGATGAAAGAgtctttaaaatgtgattttctgtttttcaccCCATGTACTTTCGTTGCAGTGCATTGCCTGAAAGCTGTTCTGTCCAGGACCACTTGatcatgtacattttttttttttttttctcattctttctctgcTTCTTTGTAcccttttattttgtaattataccaaatgtaaatgttgtatAATATTGTGCGTGCCAATCCCCTTCTCTGAGACTGACTCATAACAAGTGCCAATTGTTGTCCAAATCACATGCGGACTGTGAAATTAGACGCGGTCCccttttaaaaatgagtaaaacacTAAAGAAGAGAGTAAATGGATTTACTTTGTATTTAAGTTAGAAGATAAactgctgtttttctctttttttttttttttttttttttttaaaggaattgtaattattaaagcATGTGTTCTTTGTCCAGGTGGGAGTTGTGGGCTCAGACAAACATTGAAATCCTCGAGACGAGGAGACGTAGTggaaatttattttacaacattctCGCCATATTTTAtcgttgtttttatttgtattcgtTTCATTTCAACCACTGTTGCCTGAACCTCATTCAAACATGGAAATGATTTTCATAACCgccttctaaaaaaaaaaaaacaaaaacaaaaattataaagtatctgttttaaatttaaataaatttgttccTATACTTGCTGATGGTCTTGTAGCTTGTGTTCTTTGCGGTCCCTGAAGTGCTGAAGTGTTACCGATTTAGAATGTTAAGTCATATAGAATGAAAGTAATAGAATTTctcatgcactttattttaaatgggttgccgaatgtttttctttttttcttcagaaaggGCCACAGAGAAATTGTATATAGGGTAAATATCTAAAtctttttagctatttttaaaaatgtattacattatattattccAAGGATGTCGTCTTTAACGTACAACTGTAATATCTCCTCCACTGgaggcataaataaataaaatgttcaatacTTTAGAAACGC

Function

GO:

id name namespace
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0060158 phospholipase C-activating dopamine receptor signaling pathway biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006249000.1 lncRNA upstream 35294 937018 ~ 945525 (+) True LOC122335692
TU282468 lncRNA upstream 66752 908151 ~ 914067 (+) True rab31
TU282452 lncRNA upstream 115856 862415 ~ 864963 (+) True G190353
TU282449 lncRNA upstream 121285 859310 ~ 859534 (+) True G190350
XR_006249003.1 lncRNA upstream 128067 845940 ~ 852752 (+) True LOC122335698
TU282475 lncRNA downstream 40678 1048099 ~ 1052949 (+) False G190366
TU282477 lncRNA downstream 41929 1049350 ~ 1053122 (+) True G190367
TU282474 lncRNA downstream 42736 1050157 ~ 1104473 (+) True G190366
TU282600 lncRNA downstream 173400 1180821 ~ 1181264 (+) True G190443
TU282602 lncRNA downstream 174041 1181462 ~ 1181721 (+) True G190445
XM_043233505.1 mRNA upstream 52630 920957 ~ 928189 (+) True LOC122335651
XM_043233515.1 mRNA upstream 67405 906262 ~ 913414 (+) False rab31
XM_043233519.1 mRNA upstream 73771 894128 ~ 907048 (+) True ralbp1
XM_043233540.1 mRNA upstream 146389 817333 ~ 834430 (+) False sirt6
XM_043233544.1 mRNA upstream 312628 662618 ~ 668191 (+) True hsd11b1lb
XM_043233522.1 mRNA downstream 729 1008150 ~ 1022881 (+) True chico
XM_043233523.1 mRNA downstream 729 1008150 ~ 1022881 (+) False chico
XM_043233531.1 mRNA downstream 19468 1026889 ~ 1046964 (+) True tle2c
XM_043233530.1 mRNA downstream 19474 1026895 ~ 1046964 (+) False tle2c
XM_043233532.1 mRNA downstream 19482 1026903 ~ 1046964 (+) False tle2c
XR_006248997.1 other upstream 144141 817333 ~ 836678 (+) True sirt6
XR_006248998.1 other upstream 144141 817333 ~ 836678 (+) False sirt6
TU282180 other upstream 633665 338941 ~ 347154 (+) True G190175
TU282478 other downstream 755 1008176 ~ 1019425 (+) False chico
TU282479 other downstream 12263 1019684 ~ 1022876 (+) False chico
TU282480 other downstream 12263 1019684 ~ 1022876 (+) False chico

Expression Profile