RNA id: XM_043233500.1


Basic Information

Item Value
RNA id XM_043233500.1
length 6151
RNA type mRNA
GC content 0.49
exon number 36
gene id scn12aa
representative True

Chromosome Information

Item Value
chromosome id NW_025048446.1
NCBI id JAEQBD010000791.1
chromosome length 1202875
location 1124084 ~ 1175611 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCACTCTGATCTTCTGGAATCGCGGACGGCGCGGGGACGCAgagttcttttttaaatgactgctcGGAAAATTTAGGCAAACTTTAAATTCGGAGCGCGTAAAATGAGCGTTGCGCGGGACTTGAGGGTGATGCGTTTGTGCGGAATCCAGATTTCTGCGAAAATTTATTCACCAGCAGCAGAGCCAGTCTGAAAAATCATCCAGAGTCCTTTTCTGGGATTGGGGTTATACCTACCCGCCATGGATCAGATTGGGATTTTGGATTTACATCAGCGCAATAAATGGAAAACGCGTGGACGCAGAACGGAGTTTGCAtCTTTGAGTAACTTCTAGTACAGGACGATCAGGATGAAAAGATGGCGACCATGCTCTTACCAGCGGGTCCTGATGGCTTGCGACCGTACACTCGAGAGTCTCTGGCGGCCATCGAGCAGAGGATCAGCGAAGAGCGGACCAAGAACACGAAGGATAACAAGATGGACCCGGGGTACACGGAGGAGCCCAAACCCCGCGCCGACCTGGAGGCCGGGAAGGGGCTGCCTCGTATCTTTGGCGACATCCCCACAGGACTGGTCGGAGTCCCGCTGGAGGACATCGACCCTTTCTACTTCAAAAATCAGAGGACTTTTATAGTACTAAACAAGGGAAAAGCTATCTTCCGCTTCAGTGCCACATCTGCGCTCTACATATTCAGTCCATTTCACTGCATCAGAAGAATCGCCATAAGAATCCTAGTCCATTCTTTGTTTAGCTTGTTCATCATGTGCACAATTTTGACAAACTGCTGCTTCATGGCCATGTCGGACCCTCCGCTGTGGACCAAATACCTAGAGTATACATTCACTGGCATTTACACGTTTGAGTCTCTAATAAAGATGTTGGCCAGAGGGTTTTGCATAGAGCCCTTCACCTTCCTCCGAGACCCATGGAACTGGCTGGATTTCAGCGTCATCGTCATGGCTTATGTGACAGAGTTTGTAGACCTCGGCAACGTATCAGCATTACGGACGTTCAGAGTTCTGCGTGCTCTAAAAACTATATCAGTGATCCCAGgctTAAAGACCATTGTCAGTGCTCTCATCCAGTCGGTTAAAAAGCTAGCGGATGTGATGATCCTCACTGTTTTCTGTCTCAGTGTCTTCGCTCTGATTGGTCTACAGCTTTTTATGGGAATCCTACGACAGAAGTGTGTCCGTAGCCCCGCCCACTGTGTTAACTCCACCTTTCCCGGCAACGGGAGCTTCGTTTGTAACAACAAGACCTGGCTCTCCATCAAGGACTTTTTAACTAATGAAGACAATTTCTACAAAATTGAAGGATCCAAGGATGCCTTAATATGCGGATACAGCAGTGATGCTGGGAAGTGCCCTGATgggtttgactgtttaaaaacTGGTCGCAACCCAAACTATGGCTACACAAGCTTTGACACCTTTGGCTGGGCCTTCCTGGCTCTCTTCAGACTCATGACACAAGACTACTGGGAAAACCTCTACCATCAGACCTTACGGTCAGCAGGGAAGACCTACATGATTTTCTTTGTGCTGGTGATATTTCTGGGTTCGTTCTACCTGGTGAACTTGATCCTGGCTGTCGTGGCCATGGCATATGAGGAGCAAAACCAAGCGACCATCGCAGAGGCCTGGGCAAAAGAAAGAGAGTTTCAGCTGGCGATGGAACATCTACGCAAGGAACAAAGGGCTTTAGCAAAACAGCGCAGAAAGGAGGCTGAGATGGCCCTGGCTGCGGATTTACCGCCGTCGCCCTTCTCACGGAAAGACTCGATAAAATGCCGAAGTAGAACAAGATCCCACCGAACGCTTTCAGAGGATATGGAGGAAAACTTTTTGCCAAAATTTGACCCATTTGATGAAAAACCAGCTCACCCTCTCCTAGCCACTCTCTCCTCCCATCCTCTGAGCACCCGTCGCGGAAGCCAGCTCAGTATCTTTACCTTCCGGCCGCGCAACAGTTCAGAGGCTGACTTTGCAGATAGCGAACACAGCATCCACGATGGTGGGCAGCGAGCAGGTTCCATGGCGACGCCGTGGATCAAGCGTCGTACGGGCAGCATCAGGAGCCACTCGTCGCAGGTGTTCATGCCCACCCTCACTCTGAACGGCAGACTAAACATTTCTCTGGATCAGAACGGCATCACCAGCATCGGCCCGCACACCCCCACCTCTGTTCCAGCCTTCAGCATGGAGAAGGTCAGGAGGACATGGTATGGCCAGGAGCCAGCGTGTCAGAATGAACAGACCACTCCAGCTGCCAAGCTGACTGTCGACATGCAGGAGGAAGTCCCGCCTCGCAGGAAGAGAGGACTGAGCTCTGTTAGCTTCTTCAGTGACGTCATAGACGAACTTGAAGAGGCCCATCAGAAATGTCCTCCATGCTGGTATGAATTTGCAAAGAAGTATCTGATTTGGACCTGTTCTCCTGCCTGGCTGAGAGTAAAAGAAGGGCTTAAAGTCATGGTGATGGACCCTTTCCTGGACCTTGCTATCACCATTTGCATTGTTCTTAACACATTGTTCATGGCGCTGGAGCACTATCCCATGACCGATGAATTCAACAGCATGCTGAGTGTTGGAAACCTGGTTTTCACTGGAATCTTCACGGCAGAGATGGTGCTGAAGATCTTCGCTCTGGATCCATACTACTACTTTCAGCAAGGCTGGAACATCTTTGATGgaattattgtttgtttgagtCTTATGGAGTTGGGCCTTTCCAACGTGGAGGGTCTGTCCGTCCTTCGTTCGTTCAGACTGGTAAAAGTTTTTCAAATTGGCAAGTCATGGCCCACCCTCAACACGCTGATAAAGATCATCGGTAACTCTGTGGGCCTTGGGAACCTGGCGCTGGTCCTGGCCATCATCGTCTTCATCTTCGCTGTGGTGGGCATGCAGCTGTTTGGAAAGAACTATCAGGACTGCGTGTGTAAGATCAGCTACGACTGCACCCTTCCTCGCTGGCACATGAAGGACTTCTTCCACTCGTTCCTCATCGTGTTCAGGGTCTTGTGCGGGGAGTGGATCGAGACCATGTGGGACTGTATGGAGGTGGCCGGACAGCCGCTTTGCATTCTGGTCTTCATGCTGGTTATGGTCATAGGAAACCTGGTGGTGTTGAATCTGTTTCTGGCCCTGCTGTTGAGCTCCTTTAGCTCTGATAACCTGTCAGCACCCGATGATGACGGAGAAATGAACAACCTTCAGATAGCCATCAGTCGAATCCACTTCGGTTTCACTTGGCTGCTGGATGCCATCAAAGATCTCTTCAACGGGAACCTGACACGGCACAGGCAGAAGACCAAAGAGGTGCAGGTCTCACTGAAAGAGAACCACACCGAGTGCAACGGCGGAGTGGGAAGTTTAGAGCACCACGAAGAGAAATACATTACTCCAGAAGGAGAGGACAGTTACATGACCAATCCCAACCTCACCATCTGTGTGCCCATTGCGCCAGGAGAGTCAGATGTGGAGTTccctgaggaggaggaggaggaggagacagaGTCATCAGAGGATGAAGATCAAAAACCGGAAGTCATCAGCCTCTCTGAAGGAAGTACTGTGGACTTGAGGAAGCCTGGAGAAGATGAGGAGGAATATTCTGAGATGGCAGACGATGGCATGGATCCAGAAGAGTGTTTCCCTGAGTTCTGTATGCAGCGCTGTAAGTGTTGTAATATCAACACGACCTCTGGTCTGGGTCAAGCGTGGTGGAGGTTGAGGAAGACGTGCTATCAGATAGTGGAGCACAGCTGGTTTGAgaccttcatcatcttcatgaTCCTCCTCAGCAGTGGAGCTCTGGCATTTGAAGACATTTACATTGAACAGAGGAAGGTGGTGAAGGTGGTGTTGGAATACGCTGATAAGGTGTTCAGCTACATCTTCGTGCTGGAGATGTTTCTGAAGTGGATTGCGTATGGCTTTAAGAAGTACTTTACTAACTACTGGTGCTGGCTGGACTTCCTGATTGTGGATGTTTCTTTGATTAGCTTGGTTGCTAACTCTCTGGGCTACTCAGACTTTGGGGCCATTAAATCTTTGAGGACTCTCAGAGCTCTGAGGCCCCTGAGCCTCTCTAGATTTGAAGGAATGAGGGTGGTGGTTAATGCTCTGATCGGCGCCATCCCGTCCATCATGAACGTACTGCTGGTGTGCCTGATCTTCTGGCTCATATTTAGCATCATGGGCGTCAACCTTTTCGCTGGGAAATTCGGGAAATGTGTCAACAGGACAGGGTACATTCAAAGCGTATCCCTGGTCAACAACAAGAGTGATTGCCAGGCTATGAATGACACCCAGTTCTACTGGACCAAAGTGAAAGTCAACTTCGACAATGTGGGCCTTGGATACCTCTCACTTCTGCAGGTGGCAACATTCAAAGGCTGGATGGAAATCATGTATGCCGCTGTTGATTCCCGTGGAGTCGAGGAGCAGCCCGTCAAAGAGATAAACCTCTACATGTACCTCTACTTCGTTATTTTCATCATCTTTGGATCCTTCTTTACCTTAAATCTGTTCATCGGTGTCATCATCGATAACTTCAATCAACAGAAAAGAATGATAGGTGGCCAGGATATATTCATGACTGAAGAACAGAAAAAGTACTACAATGCAATGAAGAAACTTGGATCGAAAAAGCCACAGAAGCCAATTCCAAGACCACTGAACATTTTACAAGGATTCTTCTTCGACTTAGTGTCCAAGCAAGCCTTTGACATCACTATCATGATGCTCATTATTCTCAACATGATAACCATGATGGTCGAGACCGATGAACAATCTGCTCGTATGGAGACCATCCTAAATAACATCAACCTGGCCTTCATTGTCATCTTTACCACTGAATGCCTCATCAAGATATTTGCCCTCCGCTGTTATTTCTTCACCATTAGTTGGAACATATTTGACTTTGTAGTGGTTATTCTGTCCATCGTTGGAATTGTCCTTGCTGACATAATAGAAAAATACTTTGTGTCCCCAACTCTGTTTCGAGTGATCCGGCTGGCAAGAATAGGACGAGTTCTCAGACTAATACGAGCAGCTAAAGGAATAAGGACGTTACTTTTTGCCTTAATGATGTCACTGCCGGCATTGTTCAACAGCCTCCTGCTCTTCCTGGTCATGTTCATCTACGCCATCTTTGGCATGGCGAACTTCGCCTATGTGAAGAAGCAGGGTGGGATTGACGACATGTTCAACTTTGAGACCTTCGGGAACAGCATGATCTGCCTTTTCCAGATCACCACGTCGGCCGGTTGGGATAACCTACTAGATCCCATTCTTAACAACTCTCCGGAAGAATGCAGCTCGAGTTACATCAACACCGGGACCAATACCAAGGGCAACTGCGGCAATCCCTCAGTAGGGATCACTTTCTTCGTCAGCTACATCATCATTTCCTTCTTGATCGTGGTCAACATGTACATCGCCATCATTCTGGAGAACTTTAGCGTGGCCACAGAGGAGAGCACCGAACCTCTGAGCGAGGACGACTTCGAGATGTTCTACGAGGTCTGGGAGAAGTTCGACGTTGAGGCCACGCACTTCATTGAGTACTCCAAACTCTCCAGTTTCGCAGACAGCCTTTCCGAACCTCTGAGGATCGCCAAACCCAACAAAATCAAACTCATCAACATGGATCTACTGGTCAGCGGCGACAGGATCCACTGCCTGGACATCCTGTTTGCCTTCACCAAGCGGGTCCTTGGGGAGACCGGAGAAATGGACGCTTTGAAGCAACAAATGGAGGAGAAGTTCATGATGGCGAACCCTTCCAAGATATCCCACGAGCCCATCACCACCACCTTGCGGCGCAAGCAGAGGGATTTCAAGGCGTCACTGATCCAGCGTTGCTACCGACGGCACCTGGTTAGACGACAAATGAAGCAGGCATCTTACCTGTACAGGCACATAAACCAAGACGCACACTGGTCAGAAGAGGACAGTGCTCCGGAGCGAGAAGGACTCATAGCGTCAATGATTAAAGAGCACTACGGTCCAGAGAAGGGGCCTCCGCCATCCTATGATGCTGTAACAAAGGATCCTAGTGACCATTTCAAGATGCTAAAACCTGACTCTCAATCCAGTGAGTCTCATAAAGAAGAGACGTATGATGAAACATTTCTTTAG

Function

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0006814 sodium ion transport biological_process
GO:0001947 heart looping biological_process
GO:0001518 voltage-gated sodium channel complex cellular_component
GO:0005248 voltage-gated sodium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282474 lncRNA upstream 19611 1050157 ~ 1104473 (+) True G190366
TU282477 lncRNA upstream 70962 1049350 ~ 1053122 (+) True G190367
TU282476 lncRNA upstream 71135 974261 ~ 1052949 (+) False G190366
TU282475 lncRNA upstream 71135 1048099 ~ 1052949 (+) False G190366
XR_006249000.1 lncRNA upstream 178559 937018 ~ 945525 (+) True LOC122335692
TU282600 lncRNA downstream 5210 1180821 ~ 1181264 (+) True G190443
TU282602 lncRNA downstream 5851 1181462 ~ 1181721 (+) True G190445
TU282604 lncRNA downstream 6635 1182246 ~ 1182740 (+) True G190447
TU282606 lncRNA downstream 8163 1183774 ~ 1184048 (+) True G190449
XM_043233531.1 mRNA upstream 77120 1026889 ~ 1046964 (+) True tle2c
XM_043233530.1 mRNA upstream 77120 1026895 ~ 1046964 (+) False tle2c
XM_043233532.1 mRNA upstream 77120 1026903 ~ 1046964 (+) False tle2c
XM_043233522.1 mRNA upstream 101203 1008150 ~ 1022881 (+) True chico
XM_043233523.1 mRNA upstream 101203 1008150 ~ 1022881 (+) False chico
TU282479 other upstream 101208 1019684 ~ 1022876 (+) False chico
TU282480 other upstream 101208 1019684 ~ 1022876 (+) False chico
TU282478 other upstream 104659 1008176 ~ 1019425 (+) False chico
XR_006248997.1 other upstream 287406 817333 ~ 836678 (+) True sirt6

Expression Profile