RNA id: TU88599


Basic Information

Item Value
RNA id TU88599
length 1815
lncRNA type sense_over
GC content 0.42
exon number 3
gene id G59902
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1401759 ~ 1494731 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTAGCACACGAGCCGGAGAGCTGAATGTTTTGAAGTGCAGATATTTTATGCAGCGCTTGCACAAACATCAAAAACGGGTTCGAAAATCTGCTTACGGATCCATCTACAACAACTACAGGCTTCCTCCTTTAATCGGTTACATATACGGAGGCCAAAACATCAGGAGAACTGTCTGAAAGTGATgcgttttaaaaacatcaacatgGAAACTTCTCCACGTTATCCAGGCCGATATACCAGGAAATGGAATTAACGATATTTGGCGCTTTTGAGATCATCAGCTACTAATTGACAGATTGTTCATTTAGCTTTGAAATAGCTTTCTAGTAAATAATGGGTAAAATAGGtcttcatttagttttataaagACTCTTCTGCGTTAAGCACAGTAAGCAGCCGAGTAATGTTTCATTAGTCACGTTTTTGAATGAACCGAGTGAGCCAATGATTCGCTTTTTGAAAGAATCAGGCGTTTGATTGAATTGAGTGAGCCGACGATTCAGTGACTCAATCGTTTAAACGGTCACTGGCTTCGTTACTGACTGAATGAGCCATTTGAACAAATCgagtgagtcagtgattcagtgGCTGATTCATAAAGGCAGtcacttttttaatttctgaaagaatcagctgtttgaatgaaTCGAATAAACCGAGTATTTAGTGACTCATTCGTGAAGACAGCAGCTACTTTCGTTAACGAATGAATCAGGAGTTTGATTGAATTGAATGAACTGATGATTCTGTGACTCGCTCATTTAAAGAGTCGTTATTTCATTATtggctgattcattcattaGTCGCTGCTTTATTTCTTACTGAATCagccatttaaataaatcagtcttattcataaatgaatcaGGTGTTTGATTgaattgaatgattcagtgactcaaaaaacagtttaaaaagtCACTTGCTTTTTTACTGACTGAATCAAATCGACAATCTCCAGCTTTATCTCTTAATGAATCAGCCATTTGAATAAATCAATGACTCATTAATAAAGATCGAATCATCTGCttgaataaatcaattggacgaATAATTCAACGACTCGCTCGTTAAAATTTGCCGCCGCCTACCATTTCatttcgttttttaaaaaaccattTCATATTCCGTTTATCAATATTTACGCAACACTGAATCTTTGTAAAGCTACGCATCTGTAAAGTTTATGCAACACTTAAATGATCATCCGGGGGGACATTTCCTAGCCGAAACTGATAAGTAATCATGttattaattagattaaaaattcaaattactTGACAGCTCTAGATATAACACAACCCCACTAATGAGTGTGTATATACAACTACCACATGCACCGGTCTGGGCCCAGATGCATTCTGGGTAGCCTTGAAAAAGAGCGTCGCGAGAGAAAGAGCGCTTCGACAGCAAATGAGGAACAGATTAGAGTAATTTGTATTGGTTTCATCACTCCATCCTCCACGTCTCCTCGGCTCTCGCTCGAGGTCAGCGAGGGCCGTGGTTCTCGGAGAGGTCAAAGGTCTCTCCGGCGGTCAGGAACGCCTCGGCTcgaggtgcgtgtgtgtgtgtgcgtgcgggCCGAGCTTCAGTCCTTCAGGTTGTCCTCTCCGACGCCCTGAGCGGCCAGTTCCCTCATCACGTTGTCCAGGTAGTTGGGGTCGGGGTAGCCGTGGCCCGTGAGGTTGGAGCCGAACTCTGTTTTGTGGTGGATCTCGTTCCAGACGACCGTGTCCGTCTCCCCCGTGGTGCTGGACGTCCCGATGGTGAAGATCAGGCGACGGTCCCACGCCGTGATGAGCAACTTCAACACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88634 lncRNA upstream 9296 1392143 ~ 1393428 (+) True G59914
TU88591 lncRNA upstream 134050 1268438 ~ 1268674 (+) True G59899
TU88590 lncRNA upstream 134332 1268184 ~ 1268392 (+) True G59898
TU88575 lncRNA upstream 189715 1210815 ~ 1213009 (+) False pggt1b
TU88551 lncRNA upstream 237948 1162420 ~ 1164776 (+) True G59877
TU88662 lncRNA downstream 64401 1559132 ~ 1648740 (+) True G59938
TU88677 lncRNA downstream 66728 1561459 ~ 1651676 (+) False G59940
TU88666 lncRNA downstream 88258 1582989 ~ 1780567 (+) False G59939
TU88668 lncRNA downstream 88258 1582989 ~ 1727001 (+) True G59939
TU88698 lncRNA downstream 100981 1595712 ~ 1792467 (+) True G59952
XM_043247075.1 mRNA upstream 136490 1253631 ~ 1266234 (+) False spats2
XM_043247914.1 mRNA downstream 64389 1559120 ~ 1560367 (+) True LOC122351062
XM_043247341.1 mRNA downstream 153747 1648478 ~ 1649618 (+) True LOC122350660
XM_043246172.1 mRNA downstream 307964 1802695 ~ 1807402 (+) True serpind1
XM_043247948.1 mRNA downstream 327905 1822636 ~ 1827411 (+) True snap29
XM_043247949.1 mRNA downstream 327948 1822679 ~ 1827411 (+) False snap29
XR_006251599.1 other upstream 550720 842077 ~ 852004 (+) True znf608
TU88420 other upstream 597885 803653 ~ 804839 (+) True G59807
TU88285 other upstream 862658 537794 ~ 540066 (+) False cdc14b
TU89150 other downstream 420729 1915460 ~ 1918371 (+) True G60259
TU89212 other downstream 520149 2014880 ~ 2017520 (+) False polb
TU89216 other downstream 536147 2030878 ~ 2033063 (+) False LOC122350053
TU89217 other downstream 539161 2033892 ~ 2035980 (+) True LOC122350053
TU89218 other downstream 543021 2037752 ~ 2039836 (+) False LOC122350758

Expression Profile