RNA id: TU88718


Basic Information

Item Value
RNA id TU88718
length 268
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G59968
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1724561 ~ 1778486 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttcctAATGTTACAGACGCTTCGAGCAGGAGTTACTGAAAAATCTAAAggtaatataaaacatttaaataatgactgGGAATGtctttatacaatataaaaaatagctGACAATGTACAGAACATACTTCAATGCGTGCCGTCTGAAGGGAGGCTGATAACGCCATGCTGGAAAATAATTCatgttgcttttaaatgaaggttttgGTTTACTAAAAGagatcaacaaaaataaaaacttcagCTAGAAATCTCTTCAGCGTAATAG

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0022607 cellular component assembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0006996 organelle organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0070925 organelle assembly biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88716 lncRNA upstream 5462 1711907 ~ 1719099 (+) True G59966
XR_006251537.1 lncRNA upstream 22365 1701712 ~ 1702196 (+) True LOC122349901
TU88672 lncRNA upstream 29741 1655067 ~ 1694820 (+) True G59940
TU88673 lncRNA upstream 29741 1655067 ~ 1694820 (+) False G59940
TU88681 lncRNA upstream 29741 1661830 ~ 1694820 (+) False G59940
TU88732 lncRNA downstream 21819 1800305 ~ 1802086 (+) True G59982
TU89128 lncRNA downstream 106762 1885248 ~ 1886439 (+) True G60248
TU89148 lncRNA downstream 130042 1908528 ~ 1911167 (+) True G60258
TU89147 lncRNA downstream 130665 1909151 ~ 1911167 (+) False G60258
TU89162 lncRNA downstream 168662 1947148 ~ 1950296 (+) False G60265
XM_043247341.1 mRNA upstream 74943 1648478 ~ 1649618 (+) True LOC122350660
XM_043247914.1 mRNA upstream 164194 1559120 ~ 1560367 (+) True LOC122351062
XM_043246611.1 mRNA upstream 243007 1456231 ~ 1481554 (+) True LOC122350265
XM_043247078.1 mRNA upstream 458327 1254701 ~ 1266234 (+) False spats2
XM_043246172.1 mRNA downstream 24209 1802695 ~ 1807402 (+) True serpind1
XM_043247948.1 mRNA downstream 44150 1822636 ~ 1827411 (+) True snap29
XM_043247949.1 mRNA downstream 44193 1822679 ~ 1827411 (+) False snap29
XM_043247051.1 mRNA downstream 158275 1936761 ~ 1946949 (+) False LOC122350512
XM_043247050.1 mRNA downstream 163171 1941657 ~ 1946949 (+) False LOC122350512
XR_006251599.1 other upstream 872557 842077 ~ 852004 (+) True znf608
TU88420 other upstream 919722 803653 ~ 804839 (+) True G59807
TU88285 other upstream 1184495 537794 ~ 540066 (+) False cdc14b
TU89150 other downstream 136974 1915460 ~ 1918371 (+) True G60259
TU89212 other downstream 236394 2014880 ~ 2017520 (+) False polb
TU89216 other downstream 252392 2030878 ~ 2033063 (+) False LOC122350053
TU89217 other downstream 255406 2033892 ~ 2035980 (+) True LOC122350053
TU89218 other downstream 259266 2037752 ~ 2039836 (+) False LOC122350758

Expression Profile