RNA id: XR_006251537.1


Basic Information

Item Value
RNA id XR_006251537.1
length 284
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC122349901
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1701712 ~ 1702196 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGAGCGTTGCTGAGAACTGAGAATATGCTGTACCGACTAATAtggtgTGACTGGATTATTGCCTGACTGTGGCCTGACCATCTTGTCGAAATAGTGGATGTGAAAGGGATGCATGGTTACCGTTTACTTTAtggttaaaatattgttttgtttcgtttctttaTTACCTTTTGTTTGTAAGTGTGGAGATCCGGAGTGGTAGAGATTGAGGTACTAGTGAATGTGTTTGGTTGttgattttatgtttgtgtacCTTGTATTGCCCActgttaattgtgttttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88672 lncRNA upstream 6892 1655067 ~ 1694820 (+) True G59940
TU88673 lncRNA upstream 6892 1655067 ~ 1694820 (+) False G59940
TU88681 lncRNA upstream 6892 1661830 ~ 1694820 (+) False G59940
TU88670 lncRNA upstream 10488 1655067 ~ 1691224 (+) False G59940
TU88674 lncRNA upstream 12006 1655067 ~ 1689706 (+) False G59940
TU88716 lncRNA downstream 9711 1711907 ~ 1719099 (+) True G59966
TU88718 lncRNA downstream 22365 1724561 ~ 1778486 (+) True G59968
TU88719 lncRNA downstream 26871 1729067 ~ 1782537 (+) True G59969
TU88724 lncRNA downstream 52924 1755120 ~ 1825836 (+) True G59974
TU88732 lncRNA downstream 98109 1800305 ~ 1802086 (+) True G59982
XM_043247341.1 mRNA upstream 52094 1648478 ~ 1649618 (+) True LOC122350660
XM_043247914.1 mRNA upstream 141345 1559120 ~ 1560367 (+) True LOC122351062
XM_043246611.1 mRNA upstream 220158 1456231 ~ 1481554 (+) True LOC122350265
XM_043247078.1 mRNA upstream 435478 1254701 ~ 1266234 (+) False spats2
XM_043246172.1 mRNA downstream 100499 1802695 ~ 1807402 (+) True serpind1
XM_043247948.1 mRNA downstream 120440 1822636 ~ 1827411 (+) True snap29
XM_043247949.1 mRNA downstream 120483 1822679 ~ 1827411 (+) False snap29
XM_043247051.1 mRNA downstream 234565 1936761 ~ 1946949 (+) False LOC122350512
XM_043247050.1 mRNA downstream 239461 1941657 ~ 1946949 (+) False LOC122350512
XR_006251599.1 other upstream 849708 842077 ~ 852004 (+) True znf608
TU88420 other upstream 896873 803653 ~ 804839 (+) True G59807
TU88285 other upstream 1161646 537794 ~ 540066 (+) False cdc14b
TU89150 other downstream 213264 1915460 ~ 1918371 (+) True G60259
TU89212 other downstream 312684 2014880 ~ 2017520 (+) False polb
TU89216 other downstream 328682 2030878 ~ 2033063 (+) False LOC122350053
TU89217 other downstream 331696 2033892 ~ 2035980 (+) True LOC122350053
TU89218 other downstream 335556 2037752 ~ 2039836 (+) False LOC122350758

Expression Profile