RNA id: TU88670


Basic Information

Item Value
RNA id TU88670
length 1346
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G59940
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1561459 ~ 1694820 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAAGACAAGTTCTTTggattttagcttgcaaggattgtgGCTTCGGGTTGCAAGAGGGAGAAAAGCAGATTTCTCTCGTTTTGCCTCCGAAACTAAGATCACAAgtagctttatttatagaggaaaggacaggacAAAATAAGTAAAAGCAAATGGCAAACAAGGGTTTCAAATACGTTCGTCGTAAAAGTTATCACTTGctacattcaaattcaaattttatttgtcacatacatttATGGTACGACATTCAGTGAAATGTTCtatacaaccgtccagcatcaaaatagaaaacaaaatttaaatatatatataaaatatgaaaaatatgtataaaaatatgtataaaaagaagtgtgcaaagtaaagtataaaaaataaaataaagtacagaatataaaatataaagtataagatataaagtgtaaaatgtaaagtggctgtgcgaatgcccaatgcaaagtgactagtgcaattgtccaaatgtaagtggcgagtatctggggaaagagagggtgaacatgggaatcccggtgattaggtgctgggtgttctctggttcagactccgaatggcctgcagggaagaagctcctcctcattctctctgtgtttgccttcaggggaccaaagcgctttcctgaacgcagcagagaaaagagtccattgttgggatggctgaggtcttccacgatcttcctggccctggtacagcactgcttgttgtagatgtgctgctaTGGTGTatagggaactatggtgttgaacgctgaactatagtccacgaacagcattttcacatagttccctttcctaaaatccaggtggcttgtggttgtgtggaggaggtgtgtgatggcatcctccgtagaccggttttggcggtagtgggtcgagtgtgtccggtagtgatgcggtgacgaagtctctgacgagtctctcgaagcacttcatcactacagacgtcagagctacagggcggtaatcattcaggcaagatggttgaggtttcttcggcacaggaacaatgatggactgtttgaaacacgaggactgtagactgtttcagggagagattaaatatctcagtgaacaccggtgctagctggtcagcacaggctctcagaacccgacctgtgatgccgtcaggtcctgctgccttcctggtgttcactttcctgaatgccctccttatgttgtgctccgaaatggtgaacgcgatttcctctccggctctcttggcgtgcatgctgttcatcatacgccagcggcgctagcgtgattagcgtgattagctgcagcctcgaaacgagcataaaagttatttagctcatctgccagagaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88677 lncRNA upstream 3391 1561459 ~ 1651676 (+) False G59940
TU88662 lncRNA upstream 6327 1559132 ~ 1648740 (+) True G59938
TU88595 lncRNA upstream 160336 1403667 ~ 1494731 (+) False G59902
XR_006251537.1 lncRNA downstream 10488 1701712 ~ 1702196 (+) True LOC122349901
TU88716 lncRNA downstream 20683 1711907 ~ 1719099 (+) True G59966
TU88718 lncRNA downstream 33337 1724561 ~ 1778486 (+) True G59968
TU88719 lncRNA downstream 37843 1729067 ~ 1782537 (+) True G59969
TU88724 lncRNA downstream 63896 1755120 ~ 1825836 (+) True G59974
XM_043247341.1 mRNA upstream 5449 1648478 ~ 1649618 (+) True LOC122350660
XM_043247914.1 mRNA upstream 94700 1559120 ~ 1560367 (+) True LOC122351062
XM_043246611.1 mRNA upstream 173513 1456231 ~ 1481554 (+) True LOC122350265
XM_043247078.1 mRNA upstream 388833 1254701 ~ 1266234 (+) False spats2
XM_043246172.1 mRNA downstream 111471 1802695 ~ 1807402 (+) True serpind1
XM_043247948.1 mRNA downstream 131412 1822636 ~ 1827411 (+) True snap29
XM_043247949.1 mRNA downstream 131455 1822679 ~ 1827411 (+) False snap29
XM_043247051.1 mRNA downstream 245537 1936761 ~ 1946949 (+) False LOC122350512
XM_043247050.1 mRNA downstream 250433 1941657 ~ 1946949 (+) False LOC122350512
XR_006251599.1 other upstream 803063 842077 ~ 852004 (+) True znf608
TU88420 other upstream 850228 803653 ~ 804839 (+) True G59807
TU88285 other upstream 1115001 537794 ~ 540066 (+) False cdc14b
TU89150 other downstream 224236 1915460 ~ 1918371 (+) True G60259
TU89212 other downstream 323656 2014880 ~ 2017520 (+) False polb
TU89216 other downstream 339654 2030878 ~ 2033063 (+) False LOC122350053
TU89217 other downstream 342668 2033892 ~ 2035980 (+) True LOC122350053
TU89218 other downstream 346528 2037752 ~ 2039836 (+) False LOC122350758

Expression Profile