RNA id: TU188943


Basic Information

Item Value
RNA id TU188943
length 5151
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G139563
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 6236850 ~ 6242234 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaaaacttacacaaacacacatccatTGGAAGCTCAGTCCACAATCCAAAAGAGGTTCAAATCCTCAGACCATgccaaacaaagaaataataaaatggcCGACAGTGCCATTTTAACCTCTAAGCCCCGCCTTATCCTGCTGCAAAGAATTATGGTCTATGTAGTTTACCTGCTCCCAGGGAATTTCCAACAGCCGCCCCTCAATATGTGTGCATATTGATGAATTTAGGAAGAAAGAATATTAGATTCAGAAACAACCTGAAGTGGAATAAGACGAGCTACAGGTCTAATATAACTTTtaccatttaaacatacttcaGCTGTACGAACTTGTCCGTCAGAACTTGGAATAAGGCGAGAAATTTTGCCTACTGGCCACATACCTCTAGGCTGTTGAGGGTCCATTACAAGTACTGCTGTTTGTGAGTTTGGGCCATCAGTCAACTGTTTCCATTTATGTCTTAGTTGCAAAGTGGGGAGGTACTCTCTAATGAATCGAGTCCAAAATTGGTCTGCCAGGATTTGGCTGTGCCGCCACCGTCTCCGTTTCAATGCATCAGTCTGTGCATACACTGCTTGTGGTAGTGATGCATCCCGCCGCCCCATGAGCAGAATATTAGGAGTTATTGGATCCAAGTCAGAGATATCTGAAGATACATAACCCAGAGGTTTTGAGTTTAACATACCTTCTATTTCCACCAGTACTGTTCTCAAAACTTCCTCAGTTACAGACTGATTACAAAGAATGGTTTGAAGTGCTGTTTTGATGGATCTGATCTCCCTTTCCCATGTCCCACCGAAATGAGGAGCGTTAGGAGGATTGAAATGAAAGTTTATCTGGTGTTTGGCCAGTACTGTTTTCAAGTTAGAATTGAGGTTCTCGAAAGCTTCTTTCAGTTCTTTACTTCCACCTTTGAAATTTGTTCCTTGATCAGACCACAGCTCATAAGGACATCCTCTCCTGGAAATGAATCTTCGAAGTGCCATTAGAAAACTGTCTGTGTCAAGGTTATTGAGCAGGTCAATATGAATGCACCGTGTAGTTTGACACTTAAATAGTATGCCccattttttctctgttttgcgGCCATGACTAACCATGAAAGGTCCAAAACAATCCATTCCTGTAGCCCAAAAGGGGGGTTGCCATACCTGTAAGCGAGACGATGGTAGATCTGCCATTTGTGGATTGATTGGTTTTGCTCTCCATCGTCTGCATTGCATACAAGACCACTGGTGTTTGCGCACAGCTTGCCGTCCACGCAGAATCCAGTAGTACCTTCGAATTTCTGAGAACACTCTCTCTGGACCAGAGTGAAACAGGATCTCATCATAATGTTTGATAAGGAGTGATGTTAAAGGGTGCCTGGGATCTAGAACTATTGGATGGATGGTGTCTGGTTCAACAATGTCTAACCGTCTTAATCTACCTCCCACTCGAATCAGTTTTGTATGGGGATCATACTCAGGTGCTAAAGCTGAAAGTCTGCTGGAGTTTGGAACAGGGTGGTTTGCTTTGAGGGCATTCATCTCTTCAGGGAAACTTTCGTTCTGGGCTTGGGACAACAGCATTGCTTCCACCTGTTTCTGGGTAAGGTCTGGGACTGTTGGAGTTAAAGACTGATGTGTTTCATTCACCAAGTCAGTCCAGCTGGAGTACTTTGTGATGTCAGGCAATGGACTGGGCACATCAGCTCCTGCATGACCACAAAATTGTTTTCTCATTTCTACTTTGATTGTATTTTCAGGGCAAGGAGGCATGCATGGCCAAAGATTTTGTGGTTTTTGGAGGAAGGATGGACCATAGTTCCATTTAGAGGATGATGCCAAGGAAGTTAGGTTAAGACCTCTAGTTATATAGTCTGCAGGATTATTCTTTGAGTCCACATAATGCCAGTCATCTGGGGAGGTGTGTTCTAGGATCTCTGTCAAACGATTAGCTACGAAAGGTTTGTAGCGACAGGATTCTGATTTCACCCATGTTAAAACTACAGTGGAGTCAGACCAAAAGAAGGTTTGGTCTATCTTCAAAGTTAATTCGGTTCGAAAGAGTTTAGCCAATTGCACCCCTGTTACAGCAGCTAACAGTTCTAGTCGTGGGATGGATATGATTTTCTTGGGTGCAACTCTGGATCTTGCCATGAGAAAGGATATGTGGATGTCACCTTGAGCATTCTCTGTTTTGATGTAAGCTACAGAACCATATGCTTGTTCTGAAGCATCACAGAAGACATGCAGTTCACTTGCTTGATCACTTGTTCCATACCATCTAGGAAAACGAATGTTATGCAGACTTGGTAGTTCTTCTTCCCATTCCTGCCAGGATTGTTGCAAGGAATCTGGTAGGAGAGGTTCAtcccattctctcttttttgacCACAATTTTTGGAGAATGATTTTGGCTCGAGTGATGAAAGGACTTAGGTAACCTAATGGGTCGTATTGGGTGGCCAGTACTTTGTACACATTCCTCATTGTTAAAGTGTGGTATTTCACTGGACGGTACTTATAACCGAGAGTGTCAGAAGTGCAGTCCCAGGTTAATCCAAGCGTTCCTTCAAGTGGATTGTTAGCATCTTGATTCAAAAGTTGAATTGTGCTGGTTGCCAGAGCTTCCAGTGGGAGTTCATCAATCACTGCTGGATCATTGCTAGCCCACTGACAGATGTCAAAGCCACCTTCAGCCAAGATTGTTCTGATCCTTGTGATGAGTTCTTTAGCTTGTTTTGAATCTTTCAAGGACTGCAAACAATTGTCTACATAGAAAGACTGCAAGACTGTGTCTACAATGTCTTTGTCTGCTTGAGGGTGGTTTCTGACATGAATTTGGAGCGCATAAACAGCACAACAAGGACTGCAGGTTGTCCCAAAGGGTAGTACTTGCCATTCGTAGGTTGAAGGAGCTTCAGTCATCTGCTCACGCCAGAGAAATCTAGTGAATGGTCTGTCTTCAGGAAGGAGTCTGATCTGGTGGAACATTGCCTTGATATCGCCACTGATTGCAATAGGATGTTCACGAAATCTGAGGAGTACACCAATTAATGTAGGACCAAGGATAGGTCCTGGAAGGAGTTGCTCATTTAGAACGTAATCTTTGTGAGAGAAGGAAAAGTTGAAAACAATGCGATATTTTTGGTTATGTTCCACTAAATGATGAGGAATGTACCAGGATGCATTGGACTTAGCTTCTTGTTCTGGGGATACTAAAGAAATATAACCCAAGTCTTTTAATCTTGTGATCTCTTTGGCATAGACCGCAGTCAAACATGGATCATTTTGCAGTCTCCGTTCTGTGCTACGAAGCAATGGGAATACAGCTTCCTTCCCAGATTTAATGGTAGGCATTTCATCTTTCCACAAAAGGGGAGTTGAGTGACGTTGAACACCATCCATTTTGACTGTCTGAGATTTCTCTTCCAGCATGGCCAGGGCTCGTGTGTCCTGTTTAGATCGTGTGACCTCTCGTTCATTTTGATAGGGCAGGACATCAACTTGCCACAGTTTCTCAACATTGTGCATGAGTTCAGCAGAGGAAGATGTGGAAACATGCATACATTGGACTTTGCTTTTTACCTTGTGTAGGTAAGTTGGTCCTTGCAGGGTCCATCCCAATCGTGTGTGAATGGCCACAGGGGTTCCAGGGGGTCCAGCCCTCACCTCTTCTATGGCAGTTATCAGGTAAGTGTTGTCTGCTCCGATGAGTAGCATTGGCATGGTATTGTCAAAATCTGGCAGGGGAAGATCTTCCAGATGTTGGTAGTACCTTTTGAAATAGCTCATTGGATAGCTATGCTCAGTCAAAGCAAGATTTGAGGATGTGAACGCTCCCTTGATTACATATTGCTCAGATGGATTATCTGCTGCTGCAATATTGAATGTTACAGATGAGCCTTGTATTTGTTCAATACCTTGCCGAATGGTGTGAAGCTCCAAAACTTCAGGTGTTCCTTCAAGTTGTAATGTGTCTGCAGCTTGTGACAAGATCATTGTTCGTTCTGAACCATCATCAAGAAGAGCATATGCATGGCAAGACTGACCTTTGTAACTCAGAATGACCTTTACCATCTTCAGAAGCACTTTGGGGGGAATAGCTTGATGGGTTCAGGTAGAGTACCTTGGAGGACGAATGCTGAGGGACTAAATCATCTGTTTTCCTGTTTGCTTCATGAAGAACACCAAGGTGTGGACCCTGACATTTTGGGCAGGGTTTCTTAAGGTTACATTCCTTAGCTTGATGGTGTTTTGCACATCGCCAACATAATCCGTTGCTTCTGATCCATTCCTTCAAATTACTTGGGCTTAGTAGTCTAACTTGGGAACAGTATGTCAAGCTATGCTCCTGACTTTTACAGTATGGGCAGGATTGAGTTCTCGCATGCACAGATAATAGAGTTGGATTCTTGGCTTGGGCTTTAGCTTGTTGGAAATATGAGGAAGTAGGAACTGTAAATTGGTTCTCACGTTTGAATGACTTGATGGGGGCAGATCTAGCTGGTCTTGTGTATTCACTACTGACCAAAACACCAGATGCTAGAGCTTGGCATTGGGCTTCTCCTTGAAGCCAAGCACTGAAGTGCATTAAGTTATACTGGACATGGGGATGGTGTAACTGGGCGTACCGTGCATAGTTTGCAATTTGGTCAGTAGGTAATTTGCTTAATAATTGTTGGACATGGGATGAACAAGACAACTCTGCTGTCCCAGCTCCTGGACCTAGTGATTGAAGCATTCCCACTAGGGATTGTACTCTAAGGGCAAAGGCATGAAAACCCTTTGAATCTCCTGGACGTATTCGAGGGAGTTGCAAAATAGAGGATATCTCTCTCAGGGCAAGATGGTGTGGCTGACCATATTGCTGTTCAAGAGCTGCTACTGACTTGGTGTACGGTTGTGGGTCATGGGCATATGATAATGCTATGTAGCGAGCAGAGGGTAGCAAAAGGGTGGTCCAATAAAACATGATACTTAAACATCTCAGACTCATAGGGGGGTACCAAGTTGTCTAATGCCATTTTCAACATAATGAATTCATATGGGTCATCACTGCGAAAATCAGGAAAGGAAGGAGTAACTATACGGGATGAATAATGGCTAGTAACAGGAGTTTGGGAAGGGGAGTTGGTATAGTGAGCCTGAGGCGCATAAAAGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188864 lncRNA downstream 4768 6198483 ~ 6232082 (-) True G139497
TU188932 lncRNA downstream 53455 6181805 ~ 6183395 (-) True G139554
TU188929 lncRNA downstream 67346 6165572 ~ 6169504 (-) False LOC111194291
XR_002651014.1 lncRNA downstream 70321 6165576 ~ 6166529 (-) True LOC111194291
XR_002651016.1 lncRNA downstream 150054 6085872 ~ 6086796 (-) True LOC111194293
TU188870 lncRNA upstream 3201 6245435 ~ 6246729 (-) True G139501
TU188963 lncRNA upstream 56636 6298870 ~ 6299122 (-) True G139579
TU188964 lncRNA upstream 59292 6301526 ~ 6301757 (-) True G139580
TU188832 lncRNA upstream 62735 6304969 ~ 6309601 (-) False G139487
TU188834 lncRNA upstream 67966 6310200 ~ 6332189 (-) False G139487
XM_007258022.3 mRNA downstream 31001 6202808 ~ 6205849 (-) True LOC103029970
XM_022677913.1 mRNA downstream 182117 6038070 ~ 6054733 (-) False LOC111194281
XM_022677914.1 mRNA downstream 182117 6038070 ~ 6054733 (-) True LOC111194281
XM_022677912.1 mRNA downstream 182511 6038070 ~ 6054339 (-) False LOC111194281
XM_022677699.1 mRNA downstream 214254 6021098 ~ 6022596 (-) True LOC111194226
XM_007258031.3 mRNA upstream 197415 6439649 ~ 6473720 (-) False smg7
XM_007258029.3 mRNA upstream 197415 6439649 ~ 6473720 (-) True smg7
XM_022677894.1 mRNA upstream 268863 6511097 ~ 6549467 (-) True lamc2
XM_022677891.1 mRNA upstream 322723 6564957 ~ 6689723 (-) True lamc1
XM_022677901.1 mRNA upstream 462135 6704369 ~ 6717087 (-) False LOC103038610
XR_002651013.1 other downstream 112725 6120119 ~ 6124125 (-) True LOC103026010
XR_002651012.1 other downstream 182511 6022609 ~ 6054339 (-) False LOC111194281
TU188844 other downstream 225983 6009053 ~ 6010867 (-) True G139489
TU188315 other downstream 906045 5330078 ~ 5330805 (-) True G139105
TU188266 other downstream 960382 5276106 ~ 5276468 (-) True G139074
TU188831 other upstream 62735 6304969 ~ 6374709 (-) True G139487
TU188973 other upstream 175151 6417385 ~ 6430319 (-) True G139587
TU188974 other upstream 175151 6417385 ~ 6429345 (-) False G139587
TU189125 other upstream 926731 7168965 ~ 7182783 (-) True G139706
TU189726 other upstream 3467055 9709289 ~ 9714037 (-) False LOC103044908

Expression Profile