RNA id: XM_007249763.3


Basic Information

Item Value
RNA id XM_007249763.3
length 5627
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC103044517
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 10780102 ~ 10791128 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGGAGGGGGACCACAGAGATAATGACAGAAAGGGAGCTGGGTAGTTAGACACAGAGCCAGGCTAACGCGAGGCTGGACGGAGCGCAGAGCAGAGAGGAGTGAGAGATACCGAGCGCATCCTTTATGTggcctcctcatcctcctcagCGAGCATCACCGAGACGGAGCATCGCGATTTATCACGGCTATTAAAGACTTTCCACGCGTCGCCGCTTCTCCCGGGACCTTTCTGGGATGCTCGTATCTGCGAGCGACGCAGCCTGGACCAGAAGACACTCTGAAGCGCACGGGATTGTATTTACTGTTTTCGTTTCCACAGTGCTTGAGCTCCGGTCATCTTCCTCACAATCAAGAGCGAGCGACTGAGGCTTCTCACGGTCAAGGACAAGACGGACACACATAAAACCAGGTGCTTTTATGGAACACATAAAATGAGAGTCCCCTTATATCCACCCTTGAAACTGGACTGAAACCAAAACTCCATTATTCACAAGCCTGAGTGGACACCCAGAGTCTAATTTTCCTACATCACTTTGCATAAATCCACACTTCCCACACTTGATTTATTTGACAAGCATCTgctgactgtaaaaaaagagaagggAATATTTGGTGTGTTGGTGGTATTTTAGAAATGGATGGGAATATGGGAGAGATGTCGGTCCACAGCCATGTGGAGCTTGCACACAGTCAGGACAGTCGCGCAATGTTACACTCGCGAGACCTCTCTGCTGCCTTCCCACGTCCCTCTCTGGGAGGCCACCCCATGGGCCTAGAACATgagcacaggagcaccacatACGACCACAGCATGCCAACACTGGGCTATGGCAGGGAGACCCCAACAAGCTGTGGCAGCACTTACACAACGCTGACCCCACTCCAGCCATTCGATGACAAGttccaccatcaccatcacccatGTTTACCAGTCAGCAATGTCATCGGTAGCTTCACACTTATGCGAGAGGATAGGGGCCTTGGAGGAAACTTCTACAACCCCTATAGCAAAGACTTGGGCATGGCGCAGAGTCTGTCTCCTCCACTGGGCAGCGCAGGCCTGGAGACTACCATGCATGGTTATGGCTCATTAGGGAGCCAGAATGGACACACAGGCCAGATGCTAGCAAGCAGCCACGATGTCCATATGGGCAGCAATGGGGGTAACATATTCTGCCGAACAGCAGCAGACTTTGGGAGGGAAATGTCACCACCCTCGCTAGCCAGCGACCATGGGATCAGCCACCAGCTAAACAAGATGGACACCCACCAGCATGCACCCACCTACCACCCCCACATCTACACACAGAGCTACCAGCAGCACCACCACAGCCAACAGGCCTCAAAGCTGGGAGAGCTCCCTGGCTCTTCcccctcctcgtcctcctccaGTTCAAGCCTGGCCAGGGAGAGCATGCTAGCTGGCTCCCAGAGCAGTGGGGCAGGGGAGGAGATCAACACCAAAGACGTGGCCCAGCGGATCATCACAGAGCTGAAGAGGTACAGCATCCCGCAGGCCATCTTCGCCGAGAGGGTGCTGTGCAGGTCTCAGGGCACCCTGTCCGACCTGCTCAGAAACCCCAAGCCCTGGGGCAAGCTCAAGTCCGGCCGCGAGACCTTCAAGAGAATGTCCCGCTGGTTACAAGAGCCAGAGTTTCAGAGGATGGCATCACTGCGACTGGAAGcaTGTAAGCGTAAAGAGCAGGAGCAGTCGAAGCAAGAAAGAAACCAGGGGCCCAAACGCACTCGGCTGGTCTTCACTGACCTGCAGCGGCGTACTCTGATGGCCATCTTCAGAGAGAACCAGCGGCCTGCCAAAGACCTGCAGGTGACCATCGCTCAGCAACTGGGGCTGGAGCTCTCCACCGTCAGCAACTTCTTCATGAACGCCCGCCGCAGAAACCTCAACCGCTGGAGCGAAGAGGGACGCCCATCCTCCACTGGCTCCTCAGGGTCCAGCACCTCCTCCCCTGCCGTCTCTTGCACCACGGCATGATGGGAGAATGCGGCGGTTCTCCACAGCACGGGGCAAGCTCGTACATCTCTGCTGCCCATggagatttttactttttgtttttgaaatcAGAGGTGTTTTTACACAGAAATCAAATGAAACCAAAGATAAACCACTACAGAAAATTTTGATGTAGTTCTCAGTGTTGAATCAATACTTTAGCTTTAATTTGGAATAGAGGCCAATGAGTTCCTTTATGGAAGAAATcatgtctgtctttgtttcaGTGACAAGGGATGAAGTGAGACCGAAGCAGGTGATGGACTGATCGGTCGAGTGTCAGTATTACACAAATCAAACCATGATTGAATTGTGCATCAGATGGACAGATTTTACCCAAATCTTTTGTGCAACCTTAGTTTCTTTCAGACAAAATGGAAAGACAATTATGACCAAAGAGATATAACAAAAGAATGATGaatgagggttttttttgtttgtttgttttgagaaATAATTTAACGCTGTAACCCTGTGTGGATTTTTAGGGGAATATTTCATTATGGATAGTTCTACGACCAGCCAGTTCGAACAAAAGCTACGGCTCATTCTCTGATCCTGCTGCCCAGCATTCTGTGTGGAGATAGGCAGAGCCTATGAGCAGAACTGAACAGCATCCTCCCAAACCAAACAATGAGGCTGAATCCTACAGGGACGAAAACAGATCTGGAGGAGGGGGGGAGGAGGGGCAGTGGatgcgtttcttttttttaaagaaccctCAAAAGGACTGATCGATTGATTGGTGAACCTCGCGGGAGCTGCTGCAGAGAAATACAGGCGAAGTACAAAGAGGAACTCTGAGTCCTCTGCAGATGTACAGTGAGCGCTGGTTGTCTGTGTTTGTGATTTATTTGAAAATGACCAGTAGAGAAAACTCCTGTAGATCCATTGCAAGCTGTTACTTGGTGCTCACTTTGGAAGATGGAGAAATTTGTTCCTGGGtcatgtttctcttttttctttttgtacaaATTTCAAGCACACAAGCCCTGGTGGATCACAGGTTGTTGGTTTGGTTGTTCAACCTCAAAGACTTGATATTTATCAATCcccaaagagaaaaaaaaagaaaaaaatggattggATCTTCTTGTTTGTGACTTGAGCTTTAACCTGTCATGGACTCTTAAATTAagtattatgtttttatatttatttatgtatttatttcttccCTTATGACTATTTATTTGCTAAGTATTGtaagtatttatttcattaCGTGTTGTATGTCTATGAACTTGTCTCTGATGGGAGTCCCATCGCGATACCAAAGATGAAGGTTTGTCCTCCCTGAATGTAGGCTCTGCTATCAtcatttgtctctctctctctgtaatcagGCTGGCCTTTCAGCCGAATGCTTGAAAAGATTCACATGTGGTGCATGCCAAAGCCAGAGCTCCTCAGCCACACTGATGTAATGCAGATGCAGAAACCACAATGACTGGAGGATGCTAGAATTCTTTTACAGACGTACACAGTACTGGGTTAGGATTCTGGATGTTCAGAATGTTTGCCTGTGGAGGTTCTTGGTCTATGTCAGCGGTGTCAAAATCCAGTCCTGAAGCACTGCACAAAGTTTAATGCTTATTCTATTTTCCTGAATTCAGGACTGAATTTAGTCAGTGCTGAGTATATGATATGACCTCTTGCCCTCAGTTCAGTCCCACTGTGTTTTACACTCATACACACCAGGCCTGTGTCTTTGGGGAGGTGCTGTGCGGTACTGTGTGGACCTTGGGGGGTTCAGGGGTGAGAGAGCGGCAGGGCCGCCCGTTTTGGCTGCACTTGCTCGTGTCCCTCCGTCTTTAACCTTCGCAGGGCGTGAAGCGAGGCCCCTTCACAGCACGCACTTGAAAGAGGGACCATGAAAGAGGCCATCGACTTTTGCTGACATGAAAGAGGCCCTTTTTATCTGTGTCCTGTTGGAGGCTGGGGCCGGAGCTCGCCGCTCACTCAGCCAGGCCCATGGGTTTAGGGTATTCaaaggggagggcagatcaGAGAAGAACTGCATTACCAAACCAAGGGGAGGTGAGTGGGGAGTGCTGGAGAGTGGGAATTAAATTTTAATGAGTAACAATTGTTAGCGTGCTGTGAGCAGAGCAAAGGGTGTCTGCCTCGGCGCATGTGTTAATGCTCCAGTGCTTGTATGAGTGCAGCTCCTTGTGGTTGCTGAACCTGTGGTGTTTGATTAAGGGTTTGAGTGCTTTAGACACACCGTGGCTCTATTAGATAAAGCAGCAGATAAAAGTTCTCATTCAGCATCTCTGAGCTAACACAGCCTTGGAACTAGAAAGATGCTTCAGCAGTAATGTAGTCTTTGGGACCCCCTAGTGGTTGAAGGCTTTGTTCCAACTGAAGAAGGAAAAGGAAATGTCTCCTGGCTGAGAAGCTGAGGTGTGAGAAGAAGCTTctctgagactggacaggacgGTTTGAGGAATGTTCTGAGCTTTGGCATGTGTACACACGTGTGTATGCTGCATGCATACATACACCACATCGTTAATGTGTCTCAACTGTCTTTACGCATATATAGCCTATGCGAACACAACTGTATGGATGTATGTAAGCACTGTCTTTTGATGCTGGGACAGTGGGTTTTCTCCCCTTATTTTCAGACTACTGCTGTACATGTGTAAATTACTTAGAATTGCTGAAAAGACGTTTTCATTTTCACCACCGAAGCAACAAGTCTACCCTTTCCCTACTATGAAGAGAATTCATCTACCTCAATTGTGTGTGGTGTAGCCGAGACGTAACTGTACCAAAGATCCCATGCATTCAGGGAGAGTTTGTGTCTCATCTTTTCTAACCAAATGTGCTGGAATCAATCTGTAAACCACTAAAATCACACTTTTACCTACAGTCAGAGAAAGCTTACCTACAGGAGAAAAGTATTAGATCATGTGCGtgtatgtattaaaaaacaaaacaaaacaaaaaaaaaaacagggaaataGAGAAAACACAAGTGCAGAGACCAAATGGGACAATCGAAGCAAGAGAGGCTGGTCTTGCTGTGCTTATGATTGCTTATTCTTCCCTCCAACAAGTGTAGCCAATTGAAGTGAAAAAGAATGAATATCCAACAATTAAGTTCAGCTTTTCAGCCAAAATAACGTAAAAATGCCTCTTCAGTGTTAAACATACAAGTACTTTCACTtgatgtttttgtaatttgtctAAATAGAATATAACTTTAGAATGAGAAAAAACAGCTACATTTACAGAATCTGTAACAAATGCATCAAAATCACCCAAGAGCGCATTTCGGCCTCAGATTTAGCTGGCAAAAAAGGTGTCTAGTCTCGTGAAACCAAAAACCCATATAAATCACAGGTAGCAAAAAGCTTTAAGACCATTACAATCCATTCTGTTTGTGTCTTATGTTTAGACATCTGTCAGTCATTGTGCCATCCTCTCCTCATGTTAACCTATGAATGTGGCTAACCAACCAAAGGCTTTAAATCACGACAGTCTACATGTCAATCATAACTGGATGTTGTGTACCGATTTTGAAAATCCTTTGATACCTCATGTGAAATTGTTTGTTGTGATGTtgcactgaaaaataaaaacaaaaaaaagaagtcaCTTGTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120825 lncRNA upstream 44185 10696181 ~ 10735964 (+) True G89811
TU120840 lncRNA upstream 52851 10725327 ~ 10727298 (+) True G89826
TU120841 lncRNA upstream 55235 10721945 ~ 10724914 (+) True G89827
TU120833 lncRNA upstream 63547 10710481 ~ 10716602 (+) True G89819
TU120823 lncRNA upstream 85429 10694436 ~ 10694720 (+) True G89810
TU120851 lncRNA downstream 156 10791284 ~ 10792659 (+) True G89833
TU120869 lncRNA downstream 27644 10818772 ~ 10866013 (+) True G89847
TU120886 lncRNA downstream 93583 10884711 ~ 10886601 (+) True G89857
XR_002650432.1 lncRNA downstream 112555 10903683 ~ 10907172 (+) True LOC111193328
TU120995 lncRNA downstream 272524 11063652 ~ 11065212 (+) True G89924
XM_022673516.1 mRNA upstream 27518 10745351 ~ 10752631 (+) True hormad1
XM_022673514.1 mRNA upstream 27518 10745492 ~ 10752631 (+) False hormad1
XM_015605910.2 mRNA upstream 27518 10745600 ~ 10752631 (+) False hormad1
XM_022673515.1 mRNA upstream 27518 10745606 ~ 10752631 (+) False hormad1
XM_007249776.3 mRNA upstream 116199 10659675 ~ 10663950 (+) True scnm1
XM_022673519.1 mRNA downstream 30262 10821390 ~ 10839317 (+) True LOC103043511
XM_007249760.3 mRNA downstream 30262 10821390 ~ 10839317 (+) False LOC103043511
XM_007249761.3 mRNA downstream 41982 10833110 ~ 10839317 (+) False LOC103043511
XM_007249757.3 mRNA downstream 52484 10843612 ~ 10862180 (+) True LOC103043004
XM_007249758.3 mRNA downstream 52484 10843612 ~ 10862180 (+) False LOC103043004
TU120819 other upstream 91329 10688266 ~ 10688820 (+) True G89806
TU120818 other upstream 94093 10685657 ~ 10686056 (+) True G89805
TU120304 other upstream 1169895 9602771 ~ 9610254 (+) True G89453
TU119784 other upstream 2530715 8246214 ~ 8249434 (+) False sumo1
TU119517 other upstream 3200189 7578610 ~ 7579960 (+) True G88849
TU120940 other downstream 113516 10904644 ~ 10907172 (+) False LOC111193328
TU121370 other downstream 1344446 12135574 ~ 12138638 (+) False LOC103025787
TU121367 other downstream 1363769 12154897 ~ 12156862 (+) True G90199
TU121747 other downstream 2153700 12944828 ~ 12948250 (+) True npy
TU122125 other downstream 3480936 14272064 ~ 14274698 (+) False eif1b

Expression Profile