RNA id: TU120823


Basic Information

Item Value
RNA id TU120823
length 285
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G89810
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 10694436 ~ 10694720 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCATTGAAGCCTCCATAGGTGGTCTTGTAGAACTCGTCTTCTTCCTCTGCATCCAGCAGTTTGGACATGCGGCTCCCCGCGTTTTTCCGGGGAGCTCGACTGAACGCCAGGCTCATTTTTCCTTCCCTCAGAAATAAACCAGCACAGAACAGCGGCGGGGCTCCGAGTTACATCAACTGGCTGTATCTCTACTTATGGATAGACTGTGTAGCTAGCAGCAGGGTCCACAGACCACCCTGAGGAGCTTTAATAGTagaggtgggtaacccaggtccagaaagtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120822 lncRNA upstream 1065 10693056 ~ 10693371 (+) True G89809
TU120821 lncRNA upstream 2875 10691361 ~ 10691561 (+) True G89808
TU120817 lncRNA upstream 9372 10683998 ~ 10685064 (+) True G89804
TU120812 lncRNA upstream 20258 10672719 ~ 10674178 (+) True G89801
TU120814 lncRNA upstream 28425 10665390 ~ 10666011 (+) True G89802
TU120825 lncRNA downstream 1461 10696181 ~ 10735964 (+) True G89811
TU120833 lncRNA downstream 15761 10710481 ~ 10716602 (+) True G89819
TU120841 lncRNA downstream 27225 10721945 ~ 10724914 (+) True G89827
TU120840 lncRNA downstream 30607 10725327 ~ 10727298 (+) True G89826
TU120853 lncRNA downstream 85382 10780102 ~ 10791103 (+) False LOC103044517
XM_007249776.3 mRNA upstream 30486 10659675 ~ 10663950 (+) True scnm1
XM_007249777.3 mRNA upstream 39481 10635934 ~ 10654955 (+) True tnfaip8l2
XM_015605932.2 mRNA upstream 62230 10617522 ~ 10632206 (+) True LOC103038777
XM_007249781.3 mRNA upstream 481755 10206563 ~ 10212681 (+) True LOC103023172
XM_022673502.1 mRNA upstream 589320 10101550 ~ 10105116 (+) True LOC111193325
XM_022673516.1 mRNA downstream 50631 10745351 ~ 10752631 (+) True hormad1
XM_022673514.1 mRNA downstream 50772 10745492 ~ 10752631 (+) False hormad1
XM_015605910.2 mRNA downstream 50880 10745600 ~ 10752631 (+) False hormad1
XM_022673515.1 mRNA downstream 50886 10745606 ~ 10752631 (+) False hormad1
XM_007249763.3 mRNA downstream 85429 10780149 ~ 10791128 (+) True LOC103044517
TU120819 other upstream 5616 10688266 ~ 10688820 (+) True G89806
TU120818 other upstream 8380 10685657 ~ 10686056 (+) True G89805
TU120304 other upstream 1084182 9602771 ~ 9610254 (+) True G89453
TU119784 other upstream 2445002 8246214 ~ 8249434 (+) False sumo1
TU119517 other upstream 3114476 7578610 ~ 7579960 (+) True G88849
TU120940 other downstream 209924 10904644 ~ 10907172 (+) False LOC111193328
TU121370 other downstream 1440854 12135574 ~ 12138638 (+) False LOC103025787
TU121367 other downstream 1460177 12154897 ~ 12156862 (+) True G90199
TU121747 other downstream 2250108 12944828 ~ 12948250 (+) True npy
TU122125 other downstream 3577344 14272064 ~ 14274698 (+) False eif1b

Expression Profile