RNA id: TU120817


Basic Information

Item Value
RNA id TU120817
length 1067
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G89804
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 10683998 ~ 10685064 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTGCTTTGAATTTTGACCTCTATGTGGACCTTTAAAcgagataaaaaaacactgtccaACCATTAACTGGTCCACTCATGTTTTGGGGATACTCGAAATGAGGCCTGTACAAATTTGTGGTACTTTCTGAAGTTTAGGTTAGTGGCTTCAAAGAAATGGGCGAGCCTGTTATAGCACATCAAAATAGTTAGtccttgtttgtttttcagacagatcttcctctctctatctccccaTTTTTGTGTCTCTACATGCCTTGTTTGATGACAATCTTTTGCCTCGGGTTCTTGGCAGTGGGCTCTGCTGGCAGAGTAGCACCAGGGCACGGCAGACCATGAGCTGCCACATACTTCTTATAGGCCTCGCGAATAATCTTGAAGGCTCTAAGGTTAGCATATGGAATGTCTGTGATTGGGTCACGGTACAGGGCTGGTTTGTGAGTGACGGGACACACTTCTCTGGCAGGAACTCGGGGGGCGGGGGTTTTGGGGAAGAAGGACTGGAAGGTGTCCTCATCACTGAAGGTGATGTACGTCCTAGAGCATCTGGCACCTCCAGGTGGTAAAGAGGCAGAGGTGGATGGCTGCTGGCCAGAAAGGGGTGTTTCAGACTGGGAGGACATTGCAGCCCCTGCTGCAGGGCCTGGATGAGACTGCTGGGGGTCCTGGTCCAACCTGTAAACATCACAGGTGGACAAACAACAATCTATGCTTTTTGTAACACTGCAGACTAAATTAATACTATAAAGTATGGACTATATACTGATCTTAATAGTGTGGGTTCGGTTGGTTAGTGCATAAAATAACAGCTGCTATTGCTTCTTCACTTGCATCTTTTATTATTCTCTATTATTTGTTGCATTGAAACCACACTCAAAAAAAGAATCGGCATTTGAGTCTACTCAACTTCTAACAATTACATTGTTACTACTGTTCATACTTCAAAGTATTAGTAATAATTACACAATTGAGCAAACCTCTATGTCAAATCACAAATCACGTTTTGGGCCACCTCTCATCAACTGCTGTACACAACACGTGAATTTGTTGATAGGCTGAAGTAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120812 lncRNA upstream 9820 10672719 ~ 10674178 (+) True G89801
TU120814 lncRNA upstream 17987 10665390 ~ 10666011 (+) True G89802
TU120547 lncRNA upstream 230119 10452569 ~ 10453879 (+) False G89624
TU120597 lncRNA upstream 381621 10249309 ~ 10302377 (+) True G89667
XR_001518682.2 lncRNA upstream 394393 10227943 ~ 10289605 (+) True LOC103022254
TU120821 lncRNA downstream 6297 10691361 ~ 10691561 (+) True G89808
TU120822 lncRNA downstream 7992 10693056 ~ 10693371 (+) True G89809
TU120823 lncRNA downstream 9372 10694436 ~ 10694720 (+) True G89810
TU120825 lncRNA downstream 11117 10696181 ~ 10735964 (+) True G89811
TU120833 lncRNA downstream 25417 10710481 ~ 10716602 (+) True G89819
XM_007249776.3 mRNA upstream 20048 10659675 ~ 10663950 (+) True scnm1
XM_007249777.3 mRNA upstream 29043 10635934 ~ 10654955 (+) True tnfaip8l2
XM_015605932.2 mRNA upstream 51792 10617522 ~ 10632206 (+) True LOC103038777
XM_007249781.3 mRNA upstream 471317 10206563 ~ 10212681 (+) True LOC103023172
XM_022673502.1 mRNA upstream 578882 10101550 ~ 10105116 (+) True LOC111193325
XM_022673516.1 mRNA downstream 60287 10745351 ~ 10752631 (+) True hormad1
XM_022673514.1 mRNA downstream 60428 10745492 ~ 10752631 (+) False hormad1
XM_015605910.2 mRNA downstream 60536 10745600 ~ 10752631 (+) False hormad1
XM_022673515.1 mRNA downstream 60542 10745606 ~ 10752631 (+) False hormad1
XM_007249763.3 mRNA downstream 95085 10780149 ~ 10791128 (+) True LOC103044517
TU120304 other upstream 1073744 9602771 ~ 9610254 (+) True G89453
TU119784 other upstream 2434564 8246214 ~ 8249434 (+) False sumo1
TU119517 other upstream 3104038 7578610 ~ 7579960 (+) True G88849
trnap-agg_3 other upstream 3441021 7242906 ~ 7242977 (+) True trnap-agg_3
TU119113 other upstream 5560272 4911656 ~ 5123726 (+) False pard3
TU120818 other downstream 593 10685657 ~ 10686056 (+) True G89805
TU120819 other downstream 3202 10688266 ~ 10688820 (+) True G89806
TU120940 other downstream 219580 10904644 ~ 10907172 (+) False LOC111193328
TU121370 other downstream 1450510 12135574 ~ 12138638 (+) False LOC103025787
TU121367 other downstream 1469833 12154897 ~ 12156862 (+) True G90199

Expression Profile