RNA id: XM_015601314.2


Basic Information

Item Value
RNA id XM_015601314.2
length 3446
RNA type mRNA
GC content 0.52
exon number 14
gene id LOC103023525
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 12902277 ~ 12926324 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTAGTCAGATCATTTCTGGACGGCTTGTATGTTGAAGTCACTGGGTTGTAGAAGATGTCCGCCGCGGGTGCAGGAGGTTGCGGACCCGGACCAGGACCCAGTGCCGGTCCTGGATCCGGGGCCTCCAACCCCCGTAAGTTCAGCGAGAAAATAGCTCTGCACACCCAGCGCCAGGCTGAGGAAACCGCCGCTTTCCAGGAGGTTATGATGGACATTACCTCGACTCGGATTCAGGCTCAGAAGGTTCGGCTGGCCAGAACACAGGGCCCTTACTATGGCGGCTCTTTACCAAACGTCAATCAGATCGGCAGGAACACCCCCGACCTTCAGGGTGCATTCCACTCGAACCTGGACTCCAGTCGCTCAACACGACACCACGGGCTGGTGGAGAGGGTCCACAGAGACAGACGCTTCATCTCTCCCAGCCGGCCATACAGGAGACAAATGGACAGCTCTCATTGCAGCTCAGCGTACCTCTCGCCACCTCCTGACCCCAGCTGGAGAAGAACGAACTCAGACTCTGCACTTCACACCAGTGTGATGAATCCCCCCGCAGGAGACCCGTTTAGTGCAGGACACACCCTAAACCCGCAGGGAAGACGCAGTGGTTTGAACGAAGGAGATGGACGGAGAATGTTTCCATACCCGGTTCCTCCCATTGAGGAGAATGTGTTGGATGAAGGAAAACTTCTGAAGCCATGGGATACTAAAAAGTTACCTATCCTGACCTCGAGACCAAAATCTTGTGAAGTCCCTGGAATCACCATATTCCCCTCACCAGACCAGCAGTCCAATGCCCCTCATGTCCCGTCTGCACTGAATACGGGCGGTTCCCTGCCTGACCTGTCCAGCCTGCACTTTCCCTCCCCACTGCCAACACCACTCGACCCAGACGAGCCTGGTTACCCCTCCCTCAGCGGTGGCAACAGCACTGGCAACCTGGCCTCCACCCTCACTCAGCTCGGCATCAATACCACCAACGCCTTCCACTCTCCAAGTCTCCTGGCTTCTCTACAGGGCACGCTCAGTAATCCCTCCCTCCAATCATCACTCAGCAACCCAAATATCCAGTCATCTCTGAGCAGCCACTCATTCCCTAACTCTCTCAGCTCCAACTCCCTTCAGTCTTCACTTAGTAATCCTTCCCTGCAGTCCTCGCTAAGCTCCTCCCCTTCATTACAGTCCTCCCTCAGCAACCAGTCCTTGCAGTCCTCTTTGAGTAACTCCTCCCTAAGTGGACAGTCCCACCAGTCAGCAGCTAGTGCAGTGGGCGGGTCAGGCACCTGTTTGAGTTCGTACTCCCCGCTCTTATCTGGTCAGGTACAACCGCAGCTAAGCACCTCCCCCAGGAGGCGAACCCAGCTCTCACCTCTCAATCTACCCATCGGTCCGGAGTCCCGCAGGCATCTCTCCAAACAGTTCTCTCCCACCATCTCACCCACGCTGTCCGCCATCACACAGGGTGTTCCACTTGATACTAGTAAGCTAGCGATGGACCAGAGGTTACCGCCGTATCCCTATGGTCAGTCCCAGCAGGTCCAGAGCGCTGACACCCAGACAGGCTGCTCCTCACCACAGTCAGCTCATCCACCAGGCCAGCACCAACAACTACAGCAGcaccaacaacagcaacaacaacccGGCCAACCTCCACATCgccacccacacccacacatgcATCACCCCTACACCCAGATGCAGCCGCAAGCCATGCACCTGCACATGCAAAACATGCAGAACCTGCGCAAAACTCAGAACtttcagctgcagcagcagcttcagcggCAGGGCACCCAGCTCCAGCCGCAGTCTCAGCAGAACCAGAACTGCACGGGTGCCGCAGACACGACGGGACCACTGAACTCGCAGAACATGCAGGAGCCAGACACGCAGACCAGCAGCCAGGTGGACGAGCAGTCCGCACAGCAAGATCAGCAGAACCAGAGCCTTCCTCAACTGCAGCAGATCAGCCAGTCTCTTGCCAGTGATCTTGGACTTTACAACGACTCATTGTTACTGAACTCTCTGTTGGATGATCCATACCTGGGATTGCAGCTCACAGGAAGGCAAAACCAGAACATTGCTCAACAGTTCAGCATTGACTCTCAGGTGGAGGGTTTGACCTTTAACCACAATATGGGCTCTGGCGGTGTTGGTAAAGGCCAGGACGGCTCCTACTCCAGTCACCAGGGTGTACTAGACCTGCTGGACTCCGCAGAGCACCAGTTCCTCAACCCCAATCAGAACCAGAACTTTGGCAGCGGACGCCACACTGTCCCCAACATCATATTGACCGGTGAGGGTGGCGACTCTCCTCCTGGTCTGTCTAAAGAGATCACCAGTGCTTTATCTGGAGTGCCAGGGTTTGAAGTGGACCCATTCTCTTCAGATGACCCACTCAGGATGGACCCTCTGGCTCTGGACGGACTCGGCATGCTCACTGACGGAGACCTGATGCTGGCGGATCCTGCCGTGGAAGACTCCTTTCGTTCTGACAGACTGAAGTGAACGAGGGGAAGGAGGAGTGGATATGAAGGGGAACGGAAGGACGGGTGGAAGCTTCTAGTATTCAGGAGGAAACAGAAATTGGACTCTCCTCCTACAGCATCTCTGAGCAAAGAGGGAGTCTTTAAGGCATTCCAGTGGGATTTCTCCTCACTCTGCACCACCGCTTGAAAACTGCTGAACAGATTCCTGAATGGGACCAAATGCATTGGCTGAACACGTCTTTTGGTCCAGCTGTTTTGCTCCATGCGCCAGGCACCGATATTTCTCTTGTGATGCAAAAGTAAATGTAGGCATTAGCTTGGCTAAACCCGAACTGCATATTAACAGATGCACTTCAGATTACACGACTCTCACACAGGCGTCCAGCATGTGATACCGGCTCTGGGATAGAGTTTCGCTCAACTTGAAAATCTGTGACGGGAGATTctccttttttttgtatttgtgctCTCCTGAGAGGATCACGGCCATGTTTCTTTGTGCACTCAGTGAAGAAGAATCgccaaatatacaaatatatatatatatgaattttatgaCCAAGTTGACCACGCCACTGTTTGCCACTGATCGTAAGGCTCATGCTTTGTACTGAAAgagtatttattaataattccaAACTGAAGTATGCTCCTTCAGTGAGCTCATTCTATACAATTCTATATTCTCACATTGCCTCAACGTGAACAGAGAATCTGCCTTGCAGTTAAATAACAAGGCTTTAACTAAGTCCAAGTCCAGTCTGCTGTAAAGCCCCAAATGAAGAACAGTTAAACAGTTCTGTATAAAATGagatttgtgattaaaaaaaaaaagatcaccaATATTCCCatccaaaatatatttataaatataaatctatatatttttctctttaatgCTTCCTAAGAAGCATAAAAGCCTGTGTTTTTGTGGTCGTGATGTGACTGTGGCAGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121822 lncRNA downstream 2598 12873021 ~ 12899679 (-) True G90545
TU121825 lncRNA downstream 109322 12792443 ~ 12792955 (-) True G90547
TU121796 lncRNA downstream 159060 12741634 ~ 12743217 (-) False LOC103038102
TU121797 lncRNA downstream 159114 12741634 ~ 12743163 (-) False LOC103038102
TU121676 lncRNA downstream 263953 12638089 ~ 12638324 (-) True G90438
TU121845 lncRNA upstream 13852 12940176 ~ 12944190 (-) True G90567
TU121848 lncRNA upstream 45970 12972294 ~ 12981286 (-) True G90570
TU121854 lncRNA upstream 95765 13022089 ~ 13022608 (-) False LOC103029309
TU121861 lncRNA upstream 149943 13076267 ~ 13135062 (-) False LOC103029309
TU121863 lncRNA upstream 211567 13137891 ~ 13138334 (-) True G90580
XM_022673594.1 mRNA downstream 10361 12841911 ~ 12891916 (-) True dennd4b
XM_022673595.1 mRNA downstream 30139 12841911 ~ 12872138 (-) False dennd4b
XM_007237739.3 mRNA downstream 70426 12804670 ~ 12831851 (-) True LOC103038418
XM_022673593.1 mRNA downstream 80111 12804670 ~ 12822166 (-) False LOC103038418
XM_007237738.3 mRNA downstream 159102 12720969 ~ 12743175 (-) True LOC103038102
XM_007233377.3 mRNA upstream 73013 12999337 ~ 13016408 (-) True gsdme
XM_022673601.1 mRNA upstream 95671 13021995 ~ 13135114 (-) True LOC103029309
XM_015601317.2 mRNA upstream 218741 13145065 ~ 13159169 (-) True c10h7orf31
XM_022673356.1 mRNA upstream 331376 13257700 ~ 13259044 (-) True LOC111193301
XM_022673602.1 mRNA upstream 608284 13534608 ~ 13780573 (-) True LOC103047375
XR_002650434.1 other downstream 1272276 11608768 ~ 11630001 (-) False LOC103031398
TU120896 other downstream 2158562 10732944 ~ 10743715 (-) False LOC103045558
XR_002650430.1 other downstream 2206943 10682356 ~ 10695334 (-) False vps72
XR_002650431.1 other downstream 2243150 10655471 ~ 10659127 (-) False lysmd1
TU120738 other downstream 2677614 10223520 ~ 10224663 (-) True G89751
TU121849 other upstream 24288 12950612 ~ 12967291 (-) True G90571
TU121851 other upstream 100579 13026903 ~ 13039022 (-) False LOC103029309
TU122115 other upstream 1331631 14257955 ~ 14258956 (-) True G90788
TU122641 other upstream 2396976 15323300 ~ 15324097 (-) True G91187
TU122671 other upstream 2833637 15759961 ~ 15766432 (-) True G91208

Expression Profile