RNA id: XM_007249735.3


Basic Information

Item Value
RNA id XM_007249735.3
length 1418
RNA type mRNA
GC content 0.40
exon number 8
gene id LOC103037177
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 11147464 ~ 11156986 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATACTGACACTTTCACCACACGTAACTGCAGCTGGCAGTCTGTATCTGCTGCAGTCTGAGGATCTGTGTGTAGACTGTAGAGGTAAGATGGAGGATGAGGTGCTCTACTCTACAGTGGTTTTTACCAGATTTGATGATTCACAGCGTAGAGCAGCAGATCCAGTTGAAGAGGTTCTGTACTCAGAAATCAAGAGACATGGAGAGAAACCTCCATCACAGAGCATTCCTGAACCTACAGTGGAAGCTGCTGCATCCCGCACCCCATCATACAGAACAGCTATAGCTTGCCTGGGgctgctgtgtgttttattactggCAGGTGTAGTGGGAATGAGTGTATTCAACATCATCCAGGTCTCACAGCACAGAACCACCCTGGAGCTCTACACCAACGAGAGCACAGCACACAGCAAGCTGAAGACTGAGACAGCAGCactggagaaagagaaagaagagctGACTGTTCAGAGAAATCAGTTCAACAACACCCTGAGGTCCATCATTCAATTTCCAACATTTCCAGTCAGAGCGTTCTGTCAGATCAGGGATAGAGAGATTCACTGTGAGCCCTGTATGATGAACTGGATTCAGAACGGATCCAGCTGTTACTTATTCTATAATGGTTATGACTGGAAATCCTGGGAAAACAGCCGACAGTATTGCGTTGGAATGGGAGGAGATCTAGCTATCATAGACAGCAGAGAGGAACAGGAGTTCATCATGCAGAACTCTCCCTTTTATTATGACATTTATCACGGGTACTGGATCGGACTTTACAAAAACCCTGAAGTGTGGAAATGGACCACTGGTACTAAACTTAACGATGGGTTCTGGATTAAGCCACCACATCCCTCAGATTATAGTTGTGGAATGGTAAAACCTAGTAGTAATGCTCTGAACAGCTGGGCTCCCACCTATTGtggaatgaaaaataaatggatCTGTGAGATGAGTGCAGTGGAATGGCCAGATAAACTATAGATCACTTTAccttttttacatcaacattttgtttatatttatgtttcttgtgtttatatttgttttttgtaccctgaaatgtttttttttttgctgtttttatcaagataaaatttgtttttatttcccattatatatctactagagacagattatatctgtgcagtataatttatttaactttaatcctggatatatggatatatttcGAGTGTATTATTAGAATCATGACATtgtgaatcattgacttctgttaaaaatctgataaaattctcagttaagggtgtgccatatcatatcaggCTAAGTTTCGGACCGTCGCCAATGTTAACTTGagttataattcagtgttttattctgtttactgaagaagcctatagtagttctgtcagtgttttatcaacaactgaaagacaaaacaaattactcatactag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120995 lncRNA upstream 82252 11063652 ~ 11065212 (+) True G89924
XR_002650432.1 lncRNA upstream 240292 10903683 ~ 10907172 (+) True LOC111193328
TU120886 lncRNA upstream 260863 10884711 ~ 10886601 (+) True G89857
TU120869 lncRNA upstream 281451 10818772 ~ 10866013 (+) True G89847
TU120851 lncRNA upstream 354805 10791284 ~ 10792659 (+) True G89833
TU121025 lncRNA downstream 57966 11214952 ~ 11258447 (+) False G89946
TU121026 lncRNA downstream 99413 11256399 ~ 11258447 (+) True G89946
TU121046 lncRNA downstream 176532 11333518 ~ 11335075 (+) False G89962
TU121047 lncRNA downstream 176532 11333518 ~ 11334331 (+) False G89962
TU121049 lncRNA downstream 176532 11333518 ~ 11335454 (+) False G89962
XM_007249739.3 mRNA upstream 26803 11069222 ~ 11120661 (+) False mef2d
XM_022673526.1 mRNA downstream 18722 11175708 ~ 11253167 (+) True LOC103036059
XM_007249729.2 mRNA downstream 157257 11314243 ~ 11315372 (+) True mc2r
XM_007249728.3 mRNA downstream 182094 11339080 ~ 11346299 (+) True LOC103035108
XM_007249708.3 mRNA downstream 774981 11931967 ~ 11937335 (+) True LOC103029811
XM_022673560.1 mRNA downstream 867722 12024708 ~ 12032429 (+) True LOC103037827
TU120940 other upstream 240292 10904644 ~ 10907172 (+) False LOC111193328
TU120819 other upstream 458644 10688266 ~ 10688820 (+) True G89806
TU120818 other upstream 461408 10685657 ~ 10686056 (+) True G89805
TU120304 other upstream 1537210 9602771 ~ 9610254 (+) True G89453
TU119784 other upstream 2898030 8246214 ~ 8249434 (+) False sumo1
TU121370 other downstream 978588 12135574 ~ 12138638 (+) False LOC103025787
TU121367 other downstream 997911 12154897 ~ 12156862 (+) True G90199
TU121747 other downstream 1787842 12944828 ~ 12948250 (+) True npy
TU122125 other downstream 3115078 14272064 ~ 14274698 (+) False eif1b
TU122457 other downstream 4003229 15160215 ~ 15216508 (+) True alg14

Expression Profile