RNA id: TU56975


Basic Information

Item Value
RNA id TU56975
length 1106
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G42316
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 13620874 ~ 13622023 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACAGTACAAacccaaacataaaaaaacagaattaacattaactatcaaaagaaaaaaatatcactttGGCATCAAAAGCACTGAACAGAATttagataaaacattaaagGCAGGTTGTGTGTTCTCAATATCACAGAACTGTTTGTAGCAGAACAGGAAGCAAGACAAAGAAGACCATGTGATAACCGAAGCCACAGGTATTTAAACAGTGAGTCAATGATCGAGGTTTCCACACTGGCACTGGAAAAGGTGGTACTATACCATCTGTAATCACAAGCTATTGGGGTGTGTGTACCCACACATGACATTCTTCAGGATGGTATCTTCTGGTCTGGTGTTCTGAGCTTTGCACTGTGTAGAACACAGTTTCTAGCCCTTACACCCAGTAACTTCTTGTTGAGATTTGTCCTGTTCTTCCAGGTGATGATCAATATGAGGAAATGGAAAAGCCTAGTCAGCCTGTATAAACACACAGCATTCAGTGAACatgtttataacatttaaaatgaaccaTGTAGAAAGTGCaggcattttttaaaataaagtctgCACAGTTAGACTTAAAGGTGAttaaaataggtaaaaaaagagtagcttttaaacatggtgatgggagtattattaaatgaaaataaagattCCTGGAACATTTACTCAGTGAAAACGATTCAACTTATCTCACCTTTATGTACTTAAGTAGGATGCTTTAAACAGGTCTTGTGTTTCTCCATGTTGTACCATGGTGCCAGGAGAATATAATATTACTCCACTGTGTACTTTTGTACATTGTACATTGTTGGTGTGCCAGAAAAGCCTCTTAACTTTAGTCCCTCATATCACAGCAGAAGGTGATTAAGGTTCTGACTCTTGAAAGGTCCACAATCCTGAATGATTTCTTCTCTGAAGATATCATTCACTAAAAACACAATCTTCATCTGGCCAGTTCACAAGTGTTATGTTTATTCTGAATGCATTCTTACAAATATGTTGAAAGGTTAATCATCTCTACACAGAACAGAGGAAACCCATACAAATTAATACACAGCGATTATaggattttcttttcattatgaATCAAATAATTCTAAAGAAAAGTAAGTTTTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56966 lncRNA downstream 20918 13599494 ~ 13599956 (-) True G42308
TU56943 lncRNA downstream 103261 13509065 ~ 13517613 (-) True G42289
TU56934 lncRNA downstream 164356 13453557 ~ 13456518 (-) True G42281
TU56905 lncRNA downstream 362161 13254322 ~ 13258713 (-) True G42261
TU56890 lncRNA downstream 458069 13142395 ~ 13162805 (-) True tm2d1
TU56978 lncRNA upstream 1346 13623325 ~ 13623672 (-) True G42318
TU57021 lncRNA upstream 7909 13629888 ~ 13630159 (-) True G42353
TU57027 lncRNA upstream 78011 13699990 ~ 13736438 (-) True G42356
TU57050 lncRNA upstream 169912 13791891 ~ 13795317 (-) True G42375
TU57094 lncRNA upstream 208974 13830953 ~ 13834199 (-) True G42411
XM_022669627.1 mRNA downstream 69486 13537625 ~ 13551388 (-) False ankrd29
XM_007240095.3 mRNA downstream 69486 13537625 ~ 13551388 (-) True ankrd29
XM_007240094.3 mRNA downstream 84845 13526342 ~ 13536029 (-) True LOC103033151
XM_022669626.1 mRNA downstream 115085 13475094 ~ 13505789 (-) True kiaa1614
XM_007240086.3 mRNA downstream 170367 13448592 ~ 13450507 (-) True ier5
XM_007240098.3 mRNA upstream 8242 13630221 ~ 13664887 (-) True LOC103034756
XM_022669631.1 mRNA upstream 50927 13672906 ~ 13679084 (-) False lrrc39
XM_007240100.2 mRNA upstream 50927 13672906 ~ 13679082 (-) True lrrc39
XM_022669632.1 mRNA upstream 51249 13673228 ~ 13679084 (-) False lrrc39
XM_007240104.3 mRNA upstream 58738 13680717 ~ 13683200 (-) True LOC103036543
XR_455037.2 other downstream 1858613 11756447 ~ 11762261 (-) True borcs8
TU56308 other downstream 1888978 11727773 ~ 11731896 (-) False mef2b
TU56297 other downstream 1941879 11618521 ~ 11678995 (-) False LOC103041480
TU56287 other downstream 2151312 11451780 ~ 11469562 (-) False LOC103040665
TU56166 other downstream 2463039 11150669 ~ 11157835 (-) False G41767
TU57249 other upstream 713951 14335930 ~ 14339171 (-) True G42516
TU57490 other upstream 840694 14462673 ~ 14480502 (-) False G42661
XR_002650023.1 other upstream 1110719 14732698 ~ 14756595 (-) True LOC103027066
TU57565 other upstream 1238575 14860554 ~ 14861338 (-) True G42712
TU57631 other upstream 1344259 14966238 ~ 14966758 (-) False socs7

Expression Profile