RNA id: XM_007240098.3


Basic Information

Item Value
RNA id XM_007240098.3
length 3943
RNA type mRNA
GC content 0.49
exon number 28
gene id LOC103034756
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 13630221 ~ 13664887 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGTTAGCGCTGTGCTGTCAGCTGGGAGGAGGCTGGGCGGTTATTTGGGGAGTAAAGCTGAGTTATCTCTGTGTTGCTGAActgtagtgtagtttagtgttTGAGCAGGTTTGGTTTATAGGTTAGTTGTAATGTAGGTTAAGGAGAGAGGCTGTTCAGTGCTGGGTGAAGCAGCTGGAGTGTGGTGTTGTTAATGGGAGAGATCAGAGCTCAGAACATCACATGCCTCCTCTAATCTGCTCTTTAACTGAAGCCGCAGCGAAACCCTCGATATTATTATTCAGAGTTCTGCACCTCAGCTGCCCGGAGACTCTTCAGGAGGAGTCCAGGGTCATGTGTTAAACTACAGAGACAGTAATGGAGGAGCTTGACCCAGAGGAGCAATTCCTCCGGGATGCCCGAAATGGGAACCTGCAGGGGATCCAGAAGCTTCTGATGTCCAAAATTAAGGAAGAAGTCAAAATCGATGTCAACTGTAAAGGCAAGAGCAAATCCAATTTTGGGTGGACGCCTCTTCATCTGGCCTGTTACTTTGGCCACAGGGACGTGGTGGAGGAGCTTCTCAAGGCTGGAGCGGACGCAAATCTGACGAACAATGTAGGAGACACACCACTTCACAAAGCGGCCTTCACAGGAAGAAAGGAGGTGGTCATGTTGCTTCTTCAGTACGATGCCTGCCCTGCAGTCATCAATGGGACGGCGCAGATTCCTAAAGACATCACTCGCAATGAGGAGGTCAGGAGCATGTTAGAGGCTGCTGAACGGACTGAGGAGAggaagctggagcagcaggtgtTGGAAGCAGCGCGAGAGGGAGCCACAACCACTCTCCTAAAACTGCTAAACAGGGAAAAACCTCCCAATATCAACTGCACAGACCTGCTGGGGAACACGCCTCTACACTGCGCTGCTTACAGGGCCCAGAAACAGTGTGCGGTTAAACTTCTGCAGAATGGAGCCAACCCCAACATCAAGAACAAAAACGGTCAGACTGTGTTTGACCTGGCGAAAGACGCTGAGTTGAGGATGATCCTAGAGGGCAATATAAGTAAGggtTTGCGGcgttatgttcagatatttgaAGGTCCTCTCTGGAAGAGCACCAGGTTCTTTGGATGGCGTTCCCACTGGGTAGTTCTTCAGGACGGAGTGCTGTCTTGGTACCCTACACAGTCAGACGCAGCTTCCACCACTCAGAGGCAAGGCTGTAAACCCCTGACACAAGCCCAGTGTAGTATTAAGGAGAAGTGCTATTTTACAGTGAAGTGCTTCGACGACAGCATCCTTCACTTTAAAGTTTCACCAAAAAGTGATCCTGAAGGTGCCAGAAAAAAATGGTTGGATGCTATAGAAGAGCACTCTGCCTTCAGCACTCATTACTGCTCACAGGAGCAGGCCAGTGAGGAAGACGAGGATGAGGTGATGAAACCAGGGGAGCTCACCGATTCAGTGCTGCACGCTGAGACATGCCACGGGAAGTTGGAGGCTGATGTTTTGGCTCTTCTTTCTATGCTGAAAGAAGATGGACTCTCTGAACGTCTTCCAGCTGCTGTTCTACAGAAGCTGAGGGAAGTGTGTGAGGCGTCCAACGAGACCTGCTCAGCCCTCCGCCAGTGCCTGGACCTCTTCTCTAAACAGCAGGGGGCATGCAGTCTGAAACTAGAACAGGAAGTGGAGAAGAATAAGATCctgtctgaagctctgcagACTCTGGCCACAGAGCACCATGAGCTGGAGCAGTCTGTGGTGCGAGGCTCTCCCCCTCGCAGTGCCGTGGTTAGCGAAGACGACTTCTACGACGCTGTTTCTGatTCAGACTCTGAGAAATCGTACGGGGGCCTGGAGGTCAGCTGCTCGCTTGAGGACGGGGACGAGAACAGGTCCGAGCTTTACTGCAGCGTCCGTAGCTGTTTTACCGGGAGGATGTCTCAGGAGGATCGACGAggggatgaagaggaggaggacgaggggACCAGAGTCAATGGAGTCAAGAGGCACAGAACAAGTTTGCCTGCTCCCATGTTCTCCAGAAATGACTTCAGCATTTGGAGTATACTGAGGAAGTCAATCGGAATGGAACTGTCTAAGATTACCATGCCGGTCATCTTCAACGAGCCGCTCAGCTTCTTACAGAGACTTACGGAGTACATGGAGCACACCTCTCTCATCCACCAAGCTAACAAATCCACAGACTCCATTGAGAGAATGAAGtgtgtggcAGCGTTTGCAGTGTCTGCAGTGGCGTCTCAGTGGGAGAGGACTGGAAAACCGTTTAACCCACTGCTGGGAGAGACCTATGAACTGGTCAGaGAGGATTTGGGTTTCCGGTTGATATCAGAGCAGGTGAGCCATCATCCTCCAGTCAGTGCTTTCCATGCAGAAGGCATGCAGAAGGATTTTGTCTTCCATGGCTCAATTTACCCCAAGCTGAAGTTCTGGGGGAAAAGTGTGGAAGCTGAACCGAAGGGCACCATAACTCTGGAGCTACCTAAGTATAATGAAGCGTACACATGGACAAACCCGACGTGTTGTGTTCACAACATCATAGTAGGGCAGCTGTGGATCGAGCAGTATGGCAATGTGGAGGTGATTAATCACAGAACTGGAGAGAGGTGCTGCCTCAACTTCAAACCGTGTGGTCTTTTTGGGAAAGAACTGCACAAGGTTGAAGGCTACATTCTAGACAAAAGCAAAAAGAAAGTGTGTATGCTGTATGGGAAATGGACAGAGTGCATGTACACAGTAGACCCGGCAACGTTTGAAGCTCACAAGAAGAATGATAAGAAGGTCACAGAGGAGAAGAAAAGCAGCAAACAGGGATCCAGTGCTGAGGCCGAGGAGAGCCCACAGCAAGGAGGCGACTCTCTGGAGGTGATTCCAGGTAGCCAGCTCCTGTGGAAGATCGACCCCCGACCAGCTAACTCTGCTCAGATGTACAGTTTCACCTCGTTTGCCATGCAGCTGAATGAACTGGATGAAGAGATCGAGGCTGTGATTCCTAAAACAGACTGCAGACTTAGACCTGACATTCGTGCCATGGAGAATGGAGACATTGACCAGGCGAGTCAGGAGAAGAAGCGTCTGGAAGAGAAGCAGCGAGCAGCACGGAAGAACCGCTCCAAGTCTGATGAGGACTGGAAGGCGAGGTGGTTCCATCAAGGTCCGAACCCCCACAACAATACTCCAGACTGGCTGTTCTCCACCGCTTACTGGAGCCGGGATTATTCCGAAGTGCCTGATATTTACTGATCCAGCACCTTCCAGCTGAGCTCTGGGCCTTGTGGATGAAAAGCAGCACTCCTTTAACTCATTTCATTCTGTTACAAGCTGTTTCTGACCGAGTGCACATACATTTTCCCTTACTGACTCACTACTCCATACAGATAAACCATGAGAGCTCATCAGAATCACTGATTACCACGAGTTGGCCTTAATAATGTCTATAATATAGCAATAATGAACATCAGGAAGAGTACCAATCAGTATCCCTCCAGTGCAGACAGCTGACATGTAAATAAGGAACAAATGCATTTGGCCCATCTTGTTTTGTATCAAATATATCAAAATGATAAATTCTTAATCAGTGATCAGAGCAacatgttcatatatatatatatttttatctatgCACATGTTAAAACAGCAATCTGGCAAAGTCAGTGCCCCCCTGCCTTTTGCTCGTTTTAAGCTGCGCAAGGCATACTTTACcagtcgttatgatagcaaaagacacactgatgcacCCTAATTCGAGCTGCACGAGGAAGCAGTTGACTACAGATTGCTAAAATAAGGCcctaaatgttatttttgtgaTTTGCAGTGCATTGATACTCTTGTAGTTGATTATTAACATGGATGTTAAAGAGGACTCAAAAAACTCAAATATGATACTTGGCTTTAAAGGGTTAACCCCCCAGGCATGCAACCAGGTAGTAGTGCT

Function

GO:

id name namespace
GO:0006869 lipid transport biological_process

KEGG:

id description
K20174 OSBPL1_2, ORP1_2; oxysterol-binding protein-related protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57021 lncRNA downstream 62 13629888 ~ 13630159 (-) True G42353
TU56978 lncRNA downstream 6549 13623325 ~ 13623672 (-) True G42318
TU56976 lncRNA downstream 8198 13621484 ~ 13622023 (-) False G42316
TU56975 lncRNA downstream 8242 13620874 ~ 13621979 (-) True G42316
TU56966 lncRNA downstream 30265 13599494 ~ 13599956 (-) True G42308
TU57027 lncRNA upstream 35103 13699990 ~ 13736438 (-) True G42356
TU57050 lncRNA upstream 127004 13791891 ~ 13795317 (-) True G42375
TU57094 lncRNA upstream 166066 13830953 ~ 13834199 (-) True G42411
TU57104 lncRNA upstream 172143 13837030 ~ 13838559 (-) True G42414
TU57105 lncRNA upstream 172143 13837030 ~ 13839008 (-) False G42414
XM_022669627.1 mRNA downstream 78833 13537625 ~ 13551388 (-) False ankrd29
XM_007240095.3 mRNA downstream 78833 13537625 ~ 13551388 (-) True ankrd29
XM_007240094.3 mRNA downstream 94192 13526342 ~ 13536029 (-) True LOC103033151
XM_022669626.1 mRNA downstream 124432 13475094 ~ 13505789 (-) True kiaa1614
XM_007240086.3 mRNA downstream 179714 13448592 ~ 13450507 (-) True ier5
XM_022669631.1 mRNA upstream 8019 13672906 ~ 13679084 (-) False lrrc39
XM_007240100.2 mRNA upstream 8019 13672906 ~ 13679082 (-) True lrrc39
XM_022669632.1 mRNA upstream 8341 13673228 ~ 13679084 (-) False lrrc39
XM_007240104.3 mRNA upstream 15830 13680717 ~ 13683200 (-) True LOC103036543
XM_007240103.2 mRNA upstream 18408 13683295 ~ 13693366 (-) True dbt
XR_455037.2 other downstream 1867960 11756447 ~ 11762261 (-) True borcs8
TU56308 other downstream 1898325 11727773 ~ 11731896 (-) False mef2b
TU56297 other downstream 1951226 11618521 ~ 11678995 (-) False LOC103041480
TU56287 other downstream 2160659 11451780 ~ 11469562 (-) False LOC103040665
TU56166 other downstream 2472386 11150669 ~ 11157835 (-) False G41767
TU57249 other upstream 671043 14335930 ~ 14339171 (-) True G42516
TU57490 other upstream 797786 14462673 ~ 14480502 (-) False G42661
XR_002650023.1 other upstream 1067811 14732698 ~ 14756595 (-) True LOC103027066
TU57565 other upstream 1195667 14860554 ~ 14861338 (-) True G42712
TU57631 other upstream 1301351 14966238 ~ 14966758 (-) False socs7

Expression Profile