RNA id: TU57027


Basic Information

Item Value
RNA id TU57027
length 811
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G42356
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 13699990 ~ 13736438 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaagaaagaaaaaaaataacccCCCAAAATAAAGCATGGTGCCATTCATTCAATACATCgacttaaataatttacaaaagaATAGAAGACAAAGCAGCTACAGGAACTTAATTTTGTTCAGGGACAAGAGAACCTTTTCCTCCTCCCCATGTACACATAGTGCACTATATTTAACAGTGACATACATGAATATTACTAATTCCATGCAAATAATTCAGTCAGATATGAGCTGTAAACTTGATCTGATTTCGATTGTGGTAACAGAAGGGTTTTTAAGGGAACAACATTTCGTCTTTAAGGCTTGTGTTGGAGCAGAAACTGGGGACAGCAAACAGGACAAATTCAGAGAGATCTGATCGATCAATGATATCAAGGACTGTTAATAATTAAGGATAATCTGGCTGGTCTAATAAACTATCTTTAATGCAACACCACTTCGTTATAGTGTAAGGCAATACCCTGAGTAACAAAAGTCATTTGAGAAAGGATAGATATTGAAAAGGGAAAAGCGTGGACAAAGCGGACTGACCCGAGGTCAGTGGAGAGACTAATAAATCAATTGTCCATTCTGTGTAGAAATGCGAAGAGAATGTCAAGTTGTCCTCAGGCCATCCAGTCAGTTACAGTAGTGTGTTTCTGCTACACGACCTCCAGTCGACTCTTTTGAAAACTCCCCTCTACCTTGGCTGGAGATGAACCAAGGATGACCGATCCGATCATTTACAGATTAGCGTTAGTGGCACCGGTACCCTGGCACTCAATGATGTAGGTGTCGTTGTTGGCGTGTTCATCGTCTGCCTTATGTATAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57021 lncRNA downstream 69831 13629888 ~ 13630159 (-) True G42353
TU56978 lncRNA downstream 76318 13623325 ~ 13623672 (-) True G42318
TU56976 lncRNA downstream 77967 13621484 ~ 13622023 (-) False G42316
TU56975 lncRNA downstream 78011 13620874 ~ 13621979 (-) True G42316
TU56966 lncRNA downstream 100034 13599494 ~ 13599956 (-) True G42308
TU57050 lncRNA upstream 55453 13791891 ~ 13795317 (-) True G42375
TU57094 lncRNA upstream 94515 13830953 ~ 13834199 (-) True G42411
TU57104 lncRNA upstream 100592 13837030 ~ 13838559 (-) True G42414
TU57105 lncRNA upstream 100592 13837030 ~ 13839008 (-) False G42414
TU57108 lncRNA upstream 125216 13861654 ~ 13866339 (-) True G42415
XM_007240103.2 mRNA downstream 6624 13683295 ~ 13693366 (-) True dbt
XM_007240104.3 mRNA downstream 16790 13680717 ~ 13683200 (-) True LOC103036543
XM_022669631.1 mRNA downstream 20906 13672906 ~ 13679084 (-) False lrrc39
XM_022669632.1 mRNA downstream 20906 13673228 ~ 13679084 (-) False lrrc39
XM_007240100.2 mRNA downstream 20908 13672906 ~ 13679082 (-) True lrrc39
XM_015603322.2 mRNA upstream 156253 13892691 ~ 13913212 (-) True dph5
XM_022669643.1 mRNA upstream 269488 14005926 ~ 14016985 (-) True serpinc1
XM_007240115.3 mRNA upstream 290335 14026773 ~ 14052048 (-) False rc3h1
XM_007240113.3 mRNA upstream 290335 14026773 ~ 14052048 (-) True rc3h1
XM_007240114.2 mRNA upstream 290335 14026773 ~ 14046596 (-) False rc3h1
XR_455037.2 other downstream 1937729 11756447 ~ 11762261 (-) True borcs8
TU56308 other downstream 1968094 11727773 ~ 11731896 (-) False mef2b
TU56297 other downstream 2020995 11618521 ~ 11678995 (-) False LOC103041480
TU56287 other downstream 2230428 11451780 ~ 11469562 (-) False LOC103040665
TU56166 other downstream 2542155 11150669 ~ 11157835 (-) False G41767
TU57249 other upstream 599492 14335930 ~ 14339171 (-) True G42516
TU57490 other upstream 726235 14462673 ~ 14480502 (-) False G42661
XR_002650023.1 other upstream 996260 14732698 ~ 14756595 (-) True LOC103027066
TU57565 other upstream 1124116 14860554 ~ 14861338 (-) True G42712
TU57631 other upstream 1229800 14966238 ~ 14966758 (-) False socs7

Expression Profile