RNA id: XM_022669631.1


Basic Information

Item Value
RNA id XM_022669631.1
length 1804
RNA type mRNA
GC content 0.49
exon number 9
gene id lrrc39
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 13672906 ~ 13679084 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTTCTATGTTTTGATAGAATCAGAGCttctttaaataattgtacgatgtaatgaataataaaagtaacggTAACTAAGCAGTTGTAGACTAGCGTGAAAGTAGTATCACTCTAGGCTCTCTCTGGACTCAAGGTCTGCTTGAGATCACACTGTATTAAAACCCATTGTTAATCTGGTTAGTTCTGCTCTATTCCTGATGGTCTTTTTGAAGGGGTGAGGGTCAGGAGACAGCTGCTTTGGTGCCAGCACTACCATGTGACCCTGCTATTCCCAGTGTCTGCTCTAAATTTAGATCTTGGCCAGAGTTGCTCTTCATGTGGGAAAACCAATGACAAACACCACCGGGATAATGAGTTTTTGAGCAAAGGGAATAAAGCACTTCTTTCAGCACCTGGTCCACATTTTGGGATTATTAAGGGGCTTCCATGCTGGTGGACCACTGGAGAAGCAATCTGTGTGCAaccagaaacagagagagtgagagagagactgaactGGAATGGAAATGTTGAAAGGAGCAATAGAAACTGGACTGAGGTGGTAATGAAAGTGggtcATCATGACCGGGGTGACGGTGTGTTTTGGGACGGTGAACTCCGTCAAGGCTCTGTGGGAGACGAGGATAAAGAAGAGTAAAGATGACctgaagagagagaaggagcagagagacagagtgacagTGGGACGGCTGACCGGGGCTTGGGAGGACAGGATCACCTTGGCCAAGTTAAAGGAGAGACTGGTGACCGAGGATGGAAGGGTCATCCTACGCATCCAGAATGAAGAGTGGAAGACTCTTCCACCAGCACTGGTCCAGCTCACCCACATTCAGGAGTGGCAGCTGCACCGGACGGGCCTTCACAAGATCCCCAGCTTCATCTCCAGCTTCCAGAGCCTCATCGTTCTGGATCTGTCCCGCAATGCAATCAGACAAATCCCTAAGGAAATTGGTAAACTCACTCGGTTGCGAGAGCTGCTCGTGAGTTATAACAGGCTGAGCTGTGTACCAGAGGAGCTGAGCACCTGTGAGAGTCTGGAGAAGCTGGAACTGGCAAAGAACTCAGATCTGGATGAGCTGCCCGAACAGCTCAGCAATCTGAAGAAACTCTACCACCTGGATCTATCCCTGAACCAGTTCTCCACAATCCCAGAGTGTGTGGTGAATCTTCCTGCTCTGGAGTGGTTGGACATGGGTGGGAACAGGCTGGAGAGGTTGCCAGATGACATACACAGAATGGAAAAGTTGCACACGCTGTGGCTACAGAGAAACGAGCTGGAGTATCTGCCTGACAACATCAGCCGCATGCCCAATCTGGACACACTGGTGCTCAGCAAGAACAAGCTCAGAGACATCCCTCCTCTGATGGAGGGCATGACCAACCTCAGGTTTGTAAATTTCCGAGACAATCCGCTGACATATCACGTGACCCTGCCGGACGTGAAAGAGGacgtggaggaggaagaagatgaCAGGGAAATGTTTGGCCGAGAGTTCATGAATTACTACATCCATGAGGCTCGCAAAAGAGATTCCCAGACTTATACCTCTGTGCTGAATGTGGCACTGGAAGGTGTGGTAGAGATTGCTGCTCCATAGCTGTGATGTCCTGCATGCCACTGTCTGCTCTGCTGTCTTCCGTCCAAAGAGGCCAGACCTGTCCTGTCTGGTCCTGTCCTGTCACGTCCAGTCCTGTCTTGCTTGTTCTGCTCATCCTGTAAAGACTGTTCTGCATTCTACCTTTGCAGTCACAACACTAGAGGGCGCCATAGCCTTACAGCTATCTGTGTCTTGTTTATGGCAAA

Function

GO:

id name namespace
GO:0055008 cardiac muscle tissue morphogenesis biological_process
GO:0045214 sarcomere organization biological_process
GO:0060047 heart contraction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57021 lncRNA downstream 42747 13629888 ~ 13630159 (-) True G42353
TU56978 lncRNA downstream 49234 13623325 ~ 13623672 (-) True G42318
TU56976 lncRNA downstream 50883 13621484 ~ 13622023 (-) False G42316
TU56975 lncRNA downstream 50927 13620874 ~ 13621979 (-) True G42316
TU56966 lncRNA downstream 72950 13599494 ~ 13599956 (-) True G42308
TU57027 lncRNA upstream 20906 13699990 ~ 13736438 (-) True G42356
TU57050 lncRNA upstream 112807 13791891 ~ 13795317 (-) True G42375
TU57094 lncRNA upstream 151869 13830953 ~ 13834199 (-) True G42411
TU57104 lncRNA upstream 157946 13837030 ~ 13838559 (-) True G42414
TU57105 lncRNA upstream 157946 13837030 ~ 13839008 (-) False G42414
XM_007240098.3 mRNA downstream 8019 13630221 ~ 13664887 (-) True LOC103034756
XM_022669627.1 mRNA downstream 121518 13537625 ~ 13551388 (-) False ankrd29
XM_007240095.3 mRNA downstream 121518 13537625 ~ 13551388 (-) True ankrd29
XM_007240094.3 mRNA downstream 136877 13526342 ~ 13536029 (-) True LOC103033151
XM_022669626.1 mRNA downstream 167117 13475094 ~ 13505789 (-) True kiaa1614
XM_007240104.3 mRNA upstream 1633 13680717 ~ 13683200 (-) True LOC103036543
XM_007240103.2 mRNA upstream 4211 13683295 ~ 13693366 (-) True dbt
XM_015603322.2 mRNA upstream 213607 13892691 ~ 13913212 (-) True dph5
XM_022669643.1 mRNA upstream 326842 14005926 ~ 14016985 (-) True serpinc1
XM_007240115.3 mRNA upstream 347689 14026773 ~ 14052048 (-) False rc3h1
XR_455037.2 other downstream 1910645 11756447 ~ 11762261 (-) True borcs8
TU56308 other downstream 1941010 11727773 ~ 11731896 (-) False mef2b
TU56297 other downstream 1993911 11618521 ~ 11678995 (-) False LOC103041480
TU56287 other downstream 2203344 11451780 ~ 11469562 (-) False LOC103040665
TU56166 other downstream 2515071 11150669 ~ 11157835 (-) False G41767
TU57249 other upstream 656846 14335930 ~ 14339171 (-) True G42516
TU57490 other upstream 783589 14462673 ~ 14480502 (-) False G42661
XR_002650023.1 other upstream 1053614 14732698 ~ 14756595 (-) True LOC103027066
TU57565 other upstream 1181470 14860554 ~ 14861338 (-) True G42712
TU57631 other upstream 1287154 14966238 ~ 14966758 (-) False socs7

Expression Profile