RNA id: TU16810


Basic Information

Item Value
RNA id TU16810
length 336
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G12503
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 22063544 ~ 22065122 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cccacacactccataccacacacacaacccacaccacacataccccacacactccataccacacacacactccacagcttacataccccacaccacacacacactccaccccacacataccacacacagttcacaccacacataccccacaccacacacactccacacctgacacacaccccacactccaccacacatacaccacaccacacactccacaccacataCACCCCACACCATACAtactccaccccacacataccacacacagtTCACACCACAcctaccccacaccacacacactccacaccacacacaccccacaccccacacact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16792 lncRNA upstream 70402 21992343 ~ 21993142 (+) True G12492
TU16779 lncRNA upstream 78692 21937741 ~ 21984852 (+) True G12483
TU16762 lncRNA upstream 163824 21899470 ~ 21899720 (+) True G12470
TU16722 lncRNA upstream 321240 21741857 ~ 21742304 (+) True G12445
TU16700 lncRNA upstream 377602 21685357 ~ 21685942 (+) True G12428
TU16825 lncRNA downstream 64057 22129179 ~ 22131000 (+) True G12513
TU16828 lncRNA downstream 65481 22130603 ~ 22133642 (+) True G12514
TU16840 lncRNA downstream 99639 22164761 ~ 22197826 (+) True G12523
TU16841 lncRNA downstream 99639 22164761 ~ 22227150 (+) False G12523
TU16875 lncRNA downstream 235874 22300996 ~ 22341513 (+) False spa17
XM_022675098.1 mRNA upstream 107700 21938389 ~ 21955844 (+) True ankk1
XM_022677910.1 mRNA upstream 132240 21919218 ~ 21931304 (+) True LOC111194280
XM_022675083.1 mRNA upstream 158149 21844765 ~ 21905395 (+) True ttc12
XM_022675089.1 mRNA upstream 158149 21851036 ~ 21905395 (+) False ttc12
XM_022677900.1 mRNA upstream 236162 21764958 ~ 21827382 (+) True LOC111194279
XM_022677708.1 mRNA downstream 244230 22309352 ~ 22318452 (+) True LOC111194234
XM_022677927.1 mRNA downstream 254171 22319293 ~ 22341508 (+) True spa17
XM_022675133.1 mRNA downstream 287247 22352369 ~ 22391001 (+) True LOC103037938
XM_022675143.1 mRNA downstream 341257 22406379 ~ 22435434 (+) True LOC103038252
XM_022675158.1 mRNA downstream 341257 22406379 ~ 22435434 (+) False LOC103038252
TU16611 other upstream 599895 21459850 ~ 21463649 (+) True G12362
trnan-guu other upstream 1087267 20976204 ~ 20976277 (+) True trnan-guu
TU16384 other upstream 1091450 20963049 ~ 20972094 (+) False LOC103033739
TU16383 other upstream 1091450 20966288 ~ 20972094 (+) False LOC103033739
TU15744 other upstream 2639480 19412844 ~ 19424064 (+) False LOC103043893
TU16873 other downstream 264597 22329719 ~ 22341513 (+) False spa17
TU16874 other downstream 264597 22329719 ~ 22384972 (+) False spa17
TU16886 other downstream 408530 22473652 ~ 22512636 (+) False oaf
TU17542 other downstream 1788876 23853998 ~ 23855353 (+) True G13067
TU17745 other downstream 2649229 24714351 ~ 24717226 (+) False ccdc9

Expression Profile