RNA id: XM_022675098.1


Basic Information

Item Value
RNA id XM_022675098.1
length 3056
RNA type mRNA
GC content 0.47
exon number 8
gene id ankk1
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21938389 ~ 21955844 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGAGTTGTAGACGGAGCACTTTGTGAGCTGGAGTGTTTAgagtgtttatagagtttagagagttttaaaaatgtgattttttttagaaaaacttGTAAGAATGACTGAAAGCAGCTCCTCACAATCTGTCAGCTCCAGAGCTGAGAGTCTGGACAGGATcgtgtattttaaaaaagaagaatttgaaGTGGACTGGGTGAAAGTCTCTGACCGGAGTTTCGGCCAAGTTTATAAAGTGAAGCTGAAGCTGTGGAGAGAACAGTGCGCCGTCAAGACTTTCTCCAGTGCGGACGATTACAGGAACATGGCGCAGGTCTGCAAAATAGGGAGGACAAAACTTAAGTACCTGATTTCCAACTACGGGCTGTGCAGAGATCCATGTGCGATAGTGATGGAGTACATGAGCAGAGGATCCCTGGATAATCTCCTCACAACTCACGTCCTCATGTGGCCAAAGAAGTTCCAGATGATCCATGAGGTGGCCATGGGCATGAACTTCCTCCACAGCATGAAGCCTCCTGTCCTTAACCTGAACTTGAAGCTGTCCAACATCCTGCTTGATGATCATCTTCATGTTAAGATTTCAGATTTTGGGCTGAAACGAGGGGAAGAAAGCAAGATGGCTTTTATCGAACATTTATCGTCTCGAGGAAACATCAGCTACGTTCCCCCAGAAGCTTTTACCCAGAATCCTGAACCCCCGACAGACAAGTATGATGTTTACAGCTTCTCCATTGTGATGTGGGAGATTTTAACTCAAAAGAGGCCATACCCTGGGATGAATATGGCTGAAATATTGATCAGGGTGACATCAGGAAAAAGACCCGGAGTGGAGAAGATCCCCGATGATAAGCCTCAAGAGTGTGAAGACATGATCGAATTAATGCAGCAATGCTGGGACCAAGACAGCAGCCAAAGACCTGCTTTCTCAGACACGGTGTGGATGACTGAAGCTTTAAGTGATGTCCTGAAAATCACGATTCCCGGCATCGAGAGGAATAAGCCGTCGTTTCGACTCAGACTTTCCAAGCTCAGAAGAGATTCGAGTGATCCAGCTTACGAATGTTCAGACAGTTCAGATCAGAGCATCCACACctacctggagcagaaggatttcCAGTCCTTTAAAGAAGTCCTGAGGAAAGAGCACGTCTCGATGTCCTTCAGGGACGATAACTCTCTTCTTCACCACGCTGCCGCCAGTGGGGACGTGGAGAGTGTTCAGATGGTGTTGAACATGGGGGCTTTGGTGAACTGCCAAAGCGTCAGAGGCTACACGCCGCTCATCGTTGCGCTGCTGCGGACGTATTACGATATCTGCGCTTTGCTCATCGACCACGGTGCTGACGTTAACCTTGGTGACCATGATCTTTGGACTCCTCTACATTTTGCGGTTCAGGCCGGGAACGACCGTGCCGTTCGCATGCTGTTGGATCACAAGGCCACTGCCGACGCCAAGGACAAGGACGGGTGGACGCCATTGCATCTGGCGGCTCAGAACGGTCATGAGGGCGTGGTGCGCCTTTTGCTTCCACGCTTGGTCAGCGTAGACGAACAAGAAGAAACGTCTGGAAGAACTTCGCTGCACATGGCGTGCATGTATGGCTACTTGAACATTGCTAAACTCCTTCTTGCGAAAGGTGCTGACCCCAATATGACTGATTCTGATCAAGCCACTGCTTTGCACTTGGCTGCCGAAGAAGGGCACTTCAGAGTTGCACGGCTTTTAGTGACGAAAGGAGCAGACGTGAACAGAGTCAATGGAAGCAACTACAGCGCCTTGCACTTCGCAGCTCTAAGAGGATGCACTGGAATCTGCAGACTCTTGATGAATCATGGTGCAAATCCCAATTTCACAACCAATCAGAAGTGGACTCCCATGCATCTAGCTGCATTGAAAGGTCATCCAGAGACCGTGCTCATTCTGGAAGAGAACAAAGGGTCAATGGACGCCCGTGGACAAGGTGGATGGACTCCATTGCACTTGGCTTGCCACCATATGCAAGAGGAGGTGGTGGCCGTCTTGCTGACAGCAGGAGCCAACCCAAACCTGAAGGAGGACGGAAGCTGGACACCACTTCACCTAGCGTGCAATAAAGGTGCCTTCCCGAGCACGTTGCAACTCATCGCCAAGCATGCCGACGTCAACGCCCAGAACAACAGCAAGGACACGCCATTGCATCTGGCTGTGCAAGCCGGCAGCGCTCCAATCGTCAAAGCCCTGTTGATGAATGGTGTAGAAAAGCATGCAATAAACTCCAGAGGACAAACGGCTCTAGCTTTGGCTCAACAGCAGCAAAACAACGAGGACATTGTGCAGTTACTGAACAGCTAGAAGACGAGGTGAGACATTCAAACTTAAagctgaaaatgtaaaaaatgtaatgacggataagtacattagaatggaagtgaaggaggaggagaaggaggagaagagcaTTGATTTTCCCGTATTGATTCCATGCCTCGGCATCCTGCTCCTCCCGCCTctattgtgatttatttttctCGTTTTGTTAATATATTTCCATTGATTTTTGCACGAAGACATTTTCATAATGTGATGACTCACTGAACGAAACAGcgcaaaaaaagaagacaacacAGGTAGCCCTGTTGGGAATGCACTCCTCTACTGAGAATGAATGGAACCAATGGCATGTCTACGTTTGTGTTGGGAGCTTCATAATAATTGTGTAAGCCATCGCTGACAGGAGCTAACATCATCATGTCTTAATACTCAACATCTACTGAGATAatctcatcacagaggaatgaAATCCATTCACGGCATTCCAATCCTTTAAATCACTTCCAGTGCAAAGAGCTCAGAAACCGGTGGGACAGCATTCCTCATGTTTCCCAGCAGTGTCCTCctaactgactaactgactgacttgttttaacatgtgaaGTTCATGAGCTGTATAAACAACGTGCATAGCAACTTGATTTTGTAATAGTATGTATGATTAAGATTctaatcacctgagtattgactaattgtttgagtgattattaaatcacagtgtacagtacagccaaacaaaag

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG:

id description
K16289 ANKK1; ankyrin repeat and protein kinase domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16762 lncRNA upstream 38669 21899470 ~ 21899720 (+) True G12470
TU16722 lncRNA upstream 196085 21741857 ~ 21742304 (+) True G12445
TU16696 lncRNA upstream 222000 21679840 ~ 21716389 (+) True G12424
TU16700 lncRNA upstream 252447 21685357 ~ 21685942 (+) True G12428
TU16692 lncRNA upstream 289746 21648352 ~ 21648643 (+) True G12421
TU16792 lncRNA downstream 36499 21992343 ~ 21993142 (+) True G12492
TU16796 lncRNA downstream 74596 22030440 ~ 22082671 (+) True G12496
TU16798 lncRNA downstream 84009 22039853 ~ 22066354 (+) True G12497
TU16809 lncRNA downstream 107640 22063484 ~ 22064367 (+) False G12502
TU16810 lncRNA downstream 107700 22063544 ~ 22065122 (+) False G12503
XM_022677910.1 mRNA upstream 7085 21919218 ~ 21931304 (+) True LOC111194280
XM_022675083.1 mRNA upstream 32994 21844765 ~ 21905395 (+) True ttc12
XM_022675089.1 mRNA upstream 32994 21851036 ~ 21905395 (+) False ttc12
XM_022677900.1 mRNA upstream 111007 21764958 ~ 21827382 (+) True LOC111194279
XM_007229378.3 mRNA upstream 341037 21574950 ~ 21597352 (+) True LOC103031614
XM_022677708.1 mRNA downstream 353508 22309352 ~ 22318452 (+) True LOC111194234
XM_022677927.1 mRNA downstream 363449 22319293 ~ 22341508 (+) True spa17
XM_022675133.1 mRNA downstream 396525 22352369 ~ 22391001 (+) True LOC103037938
XM_022675143.1 mRNA downstream 450535 22406379 ~ 22435434 (+) True LOC103038252
XM_022675158.1 mRNA downstream 450535 22406379 ~ 22435434 (+) False LOC103038252
TU16611 other upstream 474740 21459850 ~ 21463649 (+) True G12362
trnan-guu other upstream 962112 20976204 ~ 20976277 (+) True trnan-guu
TU16384 other upstream 966295 20963049 ~ 20972094 (+) False LOC103033739
TU16383 other upstream 966295 20966288 ~ 20972094 (+) False LOC103033739
TU15744 other upstream 2514325 19412844 ~ 19424064 (+) False LOC103043893
TU16873 other downstream 373875 22329719 ~ 22341513 (+) False spa17
TU16874 other downstream 373875 22329719 ~ 22384972 (+) False spa17
TU16886 other downstream 517808 22473652 ~ 22512636 (+) False oaf
TU17542 other downstream 1898154 23853998 ~ 23855353 (+) True G13067
TU17745 other downstream 2758507 24714351 ~ 24717226 (+) False ccdc9

Expression Profile