RNA id: XM_022675133.1


Basic Information

Item Value
RNA id XM_022675133.1
length 1620
RNA type mRNA
GC content 0.54
exon number 7
gene id LOC103037938
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 22352369 ~ 22391001 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGACAAACACACATAGAGGCGCCCCTGAAAAAAGATGAGCACTGTGCAGAACcttaagcacacacacacacacacagtcagagcTGCTCGGGCAGGGGTCCTGAGAGTGGGGTTCAGAGCAGGCACAGTCCGGTCTGGCAGGAAGGGTTGTGTGTTCTCAGCGACGTGCCTGGAGTAGCCAAATCATGCTGGTTGCGGGGGAGAGAAGCCCAGCGCTGCTCGCAAGATGAAGAAGAGGCAGCCTTCCTCCAAAGAGGCGGCCGTTTCTTCACTTTTCCAAAAACTCGGCCTCCTCATCTTCTTCCTGGCAGCTGTCAGTGGGGTGAACATCACAAGTCCCAGCTCCGTAATTCGAGGAACTCTAGGTGGCTCAGCCCTGCTGTCTGTCAGCTACACCAGCACCAGCTCAGACCGGCCTGTTATCAAGTGGCAGCTGAAGCGGGATAAGCCGGTCACCGTGGTGCAGTCCATCGGCACGGACATCATCGGGAACCTGCGGCCTGAGTACCGCGGACGCATCCTGCTGTACGAGAACGGCTCTCTGCTTCTCAACTACCTGCAGCTATCAGACGAGGGGGCTTACGAGGTGGAGATCTCCATCACTGATGATACTTTCACCGGAGAGAAACACCTCAACCTCACTGTGGACGTGCCCATCTCCAGACCGTCTGTGCACCTAGTGGCCTCCTCAGTGCTGGAGCTCACTGAGTTCTTCACACTAAACTGCACTCACGAAAGCGGCACCAAGCCCACGTACAGCTGGCTGAAGGGCGGAAAGCCTCTGATCAATGACTCGCGTCTGCTCCTGTCACAAGACCAGAAAGTCCTGACCATCTTGCGGGTCCTGATGCCCGATGATGATGTCTACAGCTGCATGGTGGAGAACCCCATCAGCAGCATGAAGAGCTTCCCTGTCAGACTCACTGTCTACAGACGGAGTTCTCTGTATATCATCCTTTCCACCGGTGGCATTTTCTTGCTGATAACCCTGGTGACGGTGTGTGCCTGCTGGAAGCCCTCCAAAAAAAAAAGGCAACAGGCTGCCAGACTAAATGAAGAGGAGGTCGATGGCAATCATGAAGTTGCAGTTGACATTGTGCCGGGAAGAAATTATCATACTCGCAGAAAACCTGGTGGTTTGTATGTTCTGAAAGAGACGGAGTTTCCAGAAGGAGATGATGAAGCTCCATGTAGCTACATCCACCCTTTAAACACAACCCTCAGCCAATCGTACTACCCCAGCACCTTTCCACTTCCTGCCCACGCTCCCGAGGCCTACATCCACTCAGGAAGAAGATACCCCAGCACCCCTGTCCCCTCCCCCCCCACCACACCTCACTCTCCCACCCCCACACCTCCAGCATCCTCTCCAACACACCTGGCCAGCCTACCACGGAAGCCCCGCCTACCTGCTGCCAGCCCCACCCCTTCACACACTACAGAAGAACTGCCCATCACACAGGAGATGGCCACTCATAGTCGTATATAATCAgcaagaggagagagagacaggcaggtCAAAACAGCATTACAGATCACAgacaaaataatggaaataCCCAACAAACACAGctctgaacattgttgttttattctataaactacagacaacatttctc

Function

GO: NA

KEGG:

id description
K23116 HEPACAM; hepatocyte cell adhesion molecule

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16875 lncRNA upstream 10856 22300996 ~ 22341513 (+) False spa17
TU16872 lncRNA upstream 10856 22329719 ~ 22341513 (+) False spa17
TU16841 lncRNA upstream 125219 22164761 ~ 22227150 (+) False G12523
TU16840 lncRNA upstream 154543 22164761 ~ 22197826 (+) True G12523
TU16828 lncRNA upstream 218727 22130603 ~ 22133642 (+) True G12514
TU16893 lncRNA downstream 85203 22476204 ~ 22519541 (+) True G12562
TU16888 lncRNA downstream 103067 22494068 ~ 22517780 (+) False oaf
TU16927 lncRNA downstream 120529 22511530 ~ 22512347 (+) True G12581
TU16939 lncRNA downstream 181563 22572564 ~ 22615440 (+) True G12585
TU16946 lncRNA downstream 224581 22615582 ~ 22618917 (+) True G12588
XM_022677927.1 mRNA upstream 10861 22319293 ~ 22341508 (+) True spa17
XM_022677708.1 mRNA upstream 33917 22309352 ~ 22318452 (+) True LOC111194234
XM_022675098.1 mRNA upstream 396525 21938389 ~ 21955844 (+) True ankk1
XM_022677910.1 mRNA upstream 421065 21919218 ~ 21931304 (+) True LOC111194280
XM_022675083.1 mRNA upstream 446974 21844765 ~ 21905395 (+) True ttc12
XM_022675143.1 mRNA downstream 15378 22406379 ~ 22435434 (+) True LOC103038252
XM_022675158.1 mRNA downstream 15378 22406379 ~ 22435434 (+) False LOC103038252
XM_022675150.1 mRNA downstream 15379 22406380 ~ 22435434 (+) False LOC103038252
XM_007229389.3 mRNA downstream 83027 22474028 ~ 22515097 (+) True oaf
XM_022675164.1 mRNA downstream 130241 22521242 ~ 22529283 (+) True LOC103034910
TU16873 other upstream 10856 22329719 ~ 22341513 (+) False spa17
TU16611 other upstream 888720 21459850 ~ 21463649 (+) True G12362
trnan-guu other upstream 1376092 20976204 ~ 20976277 (+) True trnan-guu
TU16384 other upstream 1380275 20963049 ~ 20972094 (+) False LOC103033739
TU16383 other upstream 1380275 20966288 ~ 20972094 (+) False LOC103033739
TU16886 other downstream 82651 22473652 ~ 22512636 (+) False oaf
TU17542 other downstream 1462997 23853998 ~ 23855353 (+) True G13067
TU17745 other downstream 2323350 24714351 ~ 24717226 (+) False ccdc9
TU17747 other downstream 2324889 24715890 ~ 24717226 (+) False ccdc9
TU17784 other downstream 2464932 24855933 ~ 24857022 (+) True G13237

Expression Profile