RNA id: XM_022675164.1


Basic Information

Item Value
RNA id XM_022675164.1
length 1096
RNA type mRNA
GC content 0.58
exon number 3
gene id LOC103034910
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 22521242 ~ 22529283 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcgtgtgtgtgtgtgtattgttgtgCTCCTGCTGGAGCTGTGATGTAGGAGGAGAAGGGCACCGTGTGTTTTGTTGGGCGGTGGAGTCCGGCGCTGTCTCCGGGGATGGCGGTGCTGTGGCCGGGCTGCAGGCTGAGGGGCAGGACGCTGAGAGCGGCTCGACTTCCAGCAGCAGCTCCCTGAGCCCGGCTCCGGCTCCGGCTGCGGCTCCTCCGgctcctgctgctcctgctgccgGGGCGGGTTCCCTTCATCCAGCGCTTCTTATTCTCTAACTgCCACAGCTCGAGGATGTCTCCTCTGGTTCTGGGAGTGGGTGCTTGCTTAGCCGGGTGGATCGCTCTCTACGCTCTGCTCTGCTACACAAACGGCTCTTGTGGTTATGAATGGAACTGTCGGCTGGTCACACTGTTCCACGGCATCCTGGCCATTTGCATAACGGCCTACATAGGCTACATAGATGGACCTTGGCCTTTCAACTacccagGGACCAAAAACACCACCCTCCAGATGTCAGCTATGGTTCTGAGTCTGGGTTACTTCATCTTCGACATGGGCTGGTGCATTTACTTCCAGACGGAAGGTCTGGTGATGCTTGCCCACCACACCATGAGCATTCTGGGTATGCTCCTGACCCTGTGGCTGGGCGAGTCCGGCATCGAGGCGTGCGCCGTCATCTTCGGCAGCGAGATCACCAACCCCCTGCTGCAGACGCGCTGGTTCCTGAAGCGCTCGGGCCGCTACGAGACCTTCCTGGGCGACCTGGTGGACGTCCTGTTTGTGGTCTTGTTCGTGATCATGCGCGTGTTCGTAGGCGGCGCCATGCTGTACTGCGAGCTGATCTCGCCCAGGCCAAAGTTCATCATCAAGTGCGGCGGGGTGGCCATGTACGTCCTGTCGTGGTTGTTCGTGGCTGATATCGCACGATTTGCTTATCACAAGAGCAGCGTGAAACACCGGCGCTGGAAGAGCCGGCAGGTACAGGCTGAAGTCAACGGCCAAGAGATTAAGAGGGACTGAGAGGGCCCTGtgtgttttaaaggagaactccggtgtgaaattgagtttaggtgtagtaaaacataataaagagtac

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16893 lncRNA upstream 1701 22476204 ~ 22519541 (+) True G12562
TU16888 lncRNA upstream 3462 22494068 ~ 22517780 (+) False oaf
TU16927 lncRNA upstream 8895 22511530 ~ 22512347 (+) True G12581
TU16875 lncRNA upstream 179729 22300996 ~ 22341513 (+) False spa17
TU16872 lncRNA upstream 179729 22329719 ~ 22341513 (+) False spa17
TU16939 lncRNA downstream 43281 22572564 ~ 22615440 (+) True G12585
TU16946 lncRNA downstream 86299 22615582 ~ 22618917 (+) True G12588
TU16950 lncRNA downstream 108333 22637616 ~ 22637893 (+) True G12592
TU16951 lncRNA downstream 115441 22644724 ~ 22645561 (+) True G12593
TU16953 lncRNA downstream 121547 22650830 ~ 22651377 (+) True G12595
XM_007229389.3 mRNA upstream 6145 22474028 ~ 22515097 (+) True oaf
XM_022675143.1 mRNA upstream 85808 22406379 ~ 22435434 (+) True LOC103038252
XM_022675158.1 mRNA upstream 85808 22406379 ~ 22435434 (+) False LOC103038252
XM_022675150.1 mRNA upstream 85808 22406380 ~ 22435434 (+) False LOC103038252
XM_022675133.1 mRNA upstream 130241 22352369 ~ 22391001 (+) True LOC103037938
XM_022675174.1 mRNA downstream 4396 22533679 ~ 22614509 (+) True LOC103038567
XM_022675171.1 mRNA downstream 4396 22533679 ~ 22614509 (+) False LOC103038567
XM_022675183.1 mRNA downstream 4396 22533679 ~ 22614509 (+) False LOC103038567
XM_022675190.1 mRNA downstream 4396 22533679 ~ 22614509 (+) False LOC103038567
XM_022675180.1 mRNA downstream 4397 22533680 ~ 22614509 (+) False LOC103038567
TU16886 other upstream 8606 22473652 ~ 22512636 (+) False oaf
TU16874 other upstream 136270 22329719 ~ 22384972 (+) False spa17
TU16873 other upstream 179729 22329719 ~ 22341513 (+) False spa17
TU16611 other upstream 1057593 21459850 ~ 21463649 (+) True G12362
trnan-guu other upstream 1544965 20976204 ~ 20976277 (+) True trnan-guu
TU17542 other downstream 1324715 23853998 ~ 23855353 (+) True G13067
TU17745 other downstream 2185068 24714351 ~ 24717226 (+) False ccdc9
TU17747 other downstream 2186607 24715890 ~ 24717226 (+) False ccdc9
TU17784 other downstream 2326650 24855933 ~ 24857022 (+) True G13237
TU18064 other downstream 2523230 25052513 ~ 25056103 (+) True G13445

Expression Profile