RNA id: XM_022675171.1


Basic Information

Item Value
RNA id XM_022675171.1
length 5448
RNA type mRNA
GC content 0.52
exon number 42
gene id LOC103038567
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 22533679 ~ 22614509 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgttgtgctgctgctggttgAATGAATGCCTGTGGCTGAGCTGAGGCGCATTCCGCTGTAGACTCACCTCAGAGCGGCCTGGAGGGACAGGGACGGAGAGCTCGCCGCGGTTTGGACTTAATGCACTGCGAGGAAAGCAGCTTAACTGGAAAAACAGGCTTTTTACAGCATAAACTCgactttgtttacttgtttgaGCGCTTTTTCGCGCTGTTACACTCTGTTTTATCGGGGCTAGCGGAGCTGTTTCCCTTGAACTGAGTTTTTGGCTCCGCTGGATGGAAAATCTGCCGTGGCATCAGCCGGGACTTCACCAGGGTAACTCCGACTACACTTCAGAAAAACTGCGGGAAACTGGTGTTTTACAGGCGGATTAACGTGTAAACGCGTGTATGGATGCATGGATACGTCTTTAAGGATTCACCCGTGGACTGTATTTACAAACATGCCAGTTGGATATAAACCACATAAAAGCTGAAAACAGAAGCCCAATGAGCGACACACAGCCACCAGCACCGGAGAGATTTCCCAAAAAAGCAAACAGAACCAGTAGCATTCTCAGCAGAGATCATCCCCCTGACAAGAGACCTAAAAGTGACAAGCCTGCCATTCCTCCGGTGCATGACTCTGCTTTTGATACAACAGTGCTGGTACAGAAGAGTGGATGTGCAGTACCTGATGGAACCCCTGAGTCTTGTGGTctggtgcagagatgtgtgataATTCAGAAAGATGAGAACGGCTTTGGGTTAACTGTGAGCGGGGACAACCCTGTGTTTGTGCAGCTTGTTAAAGAGGATGGCGCTGCGATGCGTGCTGGAGTTCAGACTGGAGACAGGATCATTAAGGTTAATGGAACCCTGGTGACTCATTCAAACCACGTTGAAGTGGTGAAATTAATCAAATCGGGCTCGTATGTAGCCCTCACAGTGTTGGGCCGGCCTCCCGGGTTACCCCAGATCCCTCTTTCTGAGGTTAACTTGAATTTAGGGCCCCTGGAAGATCATGGAGCCCCAGCAGTCACATCCCTTCACTCTCCAAGGCAGAGCCGGAGCAGCCGGGAGTACAACGCTGCAAAACGGGCGTCCTCACCCCTAACAACATGGGAGGAGAACAACGTCGTACACAACCTGAAAGCAGACGTCCTGCAGAGGATGCTGGCCAAAGAGCGCCTGGAGCTACAGGAGATGAAGGAGGAATACAGCAGGAACCCCACAACTAAACTACTGAGGGACATCCAGGAAGCCAAAAAACAAATCCCACTGCTGCAGGACCAGCTCAGCAGAACCACTAAGGATGGTCTGCATTTAGGGGACAGTGAGGATGTTGGTGTGTTGGATGTTGACCAGGCCAATACTGATGGTTTCTGGAACTCTGTCTTAAAAAGCTACCATCCGGCCTCTCCAGAAAGTTTATGTCGAAGAGATTCGAGCAGTCCAAAGAGCACGCCCCGCGACAGCCTCAACTCCTGCCCTTCCCCCGAGACAGAGGACACCTCTGACCTGGACTCCCACCTCCAACACACTGCAGGGACCCCCTCCTATCGCCTGAACTCTCAAATTATTGGAGCTGAGGACGAATACTTTGACTCAGAACAGGAGCAGGTGAATGGTCAGTGTAGCTGCTTTCAGAGTATAGAGCTCCTCAAATCGAGGCCCGCTCACCTAGCGACCTTCCTACACCATGTGGTCTCTCAGTTTGACCCTGCTCCTGTGcttTGTTATCTTTATGCTGATCTCTACAAGCAAACCAATCCCAAAGAAACCCGGCGCATCTTTTTGGACTTCCTCACGTTTTTCATTGACCGAGGGGCTAACTTAAGAGTAGCTGTGCCTGAATCCATCTCCTCTGAATTGGAACGGCGGAGGCCAGAGTTAATTCCTGAGGACTTGCATCGACAGTTTATCCAGACAACGCAGGACACAGTTCTTCCTGAAGTCCAGAGGATTCTAGAGGACTTCAGGCAGAAGCGCAGTATGGGGCTGACCCTGGCTGATGGAGAACTGGCTCAGCTGGACATGGAGCAGATTAGAGACAGTCCTGCCATGGAGAGggaaagatccagcgccgagaaCATCGTCTCCAAGATAGACGACATCCTGTTAACATCGCTGGCTGCAGAAGAAGATAAATGCACCACAATACAGTATGTGATCTTAAGCTACATGAAGCTGCTGGGAGTGAGGAGCAAAGAACAGCGCAACCTGGAGTCCAAACGTGTGCGCATCAACTTCCTGCCCAAGATAAAGAAAACTGTACAGAAGAGCAGCAACCCAGAGAAGGAGGGGGAGGAGAAGGTGAAGAAGCCACGTTTCAACATCCTGGGACCTTCACGCTGGCCCAGCCGTGTTGATTCGCCATCTGaagctGGTCGCTCTGTGGATGGAAATAAGCAGAGGCCACAGAAGCAGCTGTCCCAGCCGGTGATGGGGACGTGTGATCCAGCAGAGGGCGGGCGTTTGCGGGGGAGTCAGTCCAGCGAGGGATCAGACCTCGTCCAGAATCCTGCTTGCAGTTCTGCATCTCCCTGCAGCACCATCTACAGCCCAGCCTCAGACACTGCCTTCAGAGACCCAGATCATGGTGGAAGCCCGTCCTCCGTGGTCCCTCGTCACAGTGATGGTGTGCAGGCTGTGGAGGGTCTGGATGGCCCTTACCCTCCCTGCGACTACCCCCCCTGCGGCCTGGAGCAACTGGAtgaggagagagatggagacagACTCCTGGTGGATGTGGGCACGCCTAAGCTGAGCAGGAGGCTAGAGGAGGTGCTGAGTGAGGACGATGGTGGAGGTGGCGGTGGTGGTGTGTACTCTGATGTGGATCCTCCGAATTGGCAGCAGCTGGTGGGGCGTGAGGTTCTGGCTGGACTGACTCCTCACGAGATCAAGAGACAGGAAGTCATTAACGAGCTGTTCTACACTGAGCGTGCACATGTACGCATGCTGAAAGTCCTGGACAGCGTCTTCTACCAAAAACTCTCCAGAGACAATATACTGCCCCCTGCTGACATCAAAAACATCTTCACCAACCTGGAGGAGATCATCCAGCTCCATGTGAGTATCTCGGAGCAGATGGGGGCGATACGCAAGAAGAATGATTCATCAGTTGTCGACCAAATTGGAGATGATTTGCTGTCTTGGTTcagcggaggagaggaggagaagatgaGGAGGGCTGTGGGCACGTTCTGCAGCAATCAGCCCTTCGCTCTGGAGCTCATCAAGAGCCGGCAGAAGAAGGACCAGCGATTCGCCACCTTCATGCAGGAGGCGGAGAGTAATCGGTTGTGTCGGAGGCTGCAGCTCAAGGACATCATTCCAGCCGAGATGCAGAGGCTCACCAAGTATCCGCTGCTACTGGAGAACATCGCCAAGTACACTGATGATGCTAAAGAGAAAGACAAGGTGAGGAGAGCAGCTGATTGCTGTCGGAAGATTCTCAACCACGTTAACCAGGCAGTAAAGGAGTCTGAAAATAAGCAGCATCTGGAAGACTACCAGCGGCGCCTGGACTTCTCGTCCCTGAAGCAGAGTGAGAATCCCCTCATCGCTGAGTTTAAGAATTTGGATCTGACCAAGAGGAAGTTGGTCCACGAAGGTCCACTAAACTGGAAGTTAAACAAAGACAAGACTGTTGagttATACACTCTGCTCCTGGAGGACATCCTTGTTCTGTTGCAGAAACAGGACGAGAAACTGATTCTAAAGTGCCACAGTAAGAACCGGGCTGGAACCGTGGACACGCAGCACATATTCAGCCCTGTTATTAAACTCAGCACTGTACTGGTGCGCTCTGTGGCCACAGACAACAGGTCCTTCTTTGTGCTCTCCATGTCCGACAACGGAGCTCAGATCTATGAGCTGATGGCTCAGACAGTGTCTGAACAGAGAACGTGGCAGAGGCAGATCACTCAGCGAGCAGAAGCTATGAAGGCCAAACCCCACAGTGTTATCCCCCTGCCTCAGTCCAGtggagaaagagaaagcctGGAATCcgtcagtaaactcagtaaaggccCAGAGCGGGTGTCTGCTGGCAGCTCAGATAAAGGCCGCGGCAGATCGTCTGCTGCCCTCCACAGCTGCGGCCCCGCCTCGAACCCTGAGGAAGAAGAGCAGGGTGAGGACAGCGGCCGCGACGAAAGCTCTTATCTGGATCCAGAGCTTCTAGACGGACGAGATGTGTACTCTCTATCCTCTTCCTGTAGAGCAGAGGAGGCACTGAAAACCTTGGCCGCCCTTAAGCAGGTGCTGTTGACCCAGCTGATGGCGCAGGACGACGGGGAGAGGCTTGGGAGGTCTCCTGGGGGACGTCTCCTCAGGACCACGTCTCTGCGCACACCGGTGGAGCACAGCTCCGGCCGCTCAGCCTGCAGGACGCAGGATGCTGCTTCAGGAGACACCGGCTTCTATGAGGGTTCTGAAGACTATGCAGCAGGTTATCTGGTGCTGGAGGGCTACAGCGGGTCGAGGGAGAGCAGTACTGATGATGATGTTCATGTTGGAGGAATGGAGCTCGGTTTGTCTCAGAGCTGCGCTGCAGATTCAGGAATCAGCCTCCGGTTCTCCTCGGCCTCTGTGGAGAGCACCTGTCGCCTCAGTCGGCAGGTTCTAACACACCTGCGTTCCCTGCAGGCCAACCTTAACCACCTCAAGGAGGTGGAGAGCAGGTATTACAGCCTGTTACGGCAGCAGCAAGCAGGGTTATCAGGAGACGCCGGGGAGAGCAAAGATAAGAAATAGTGCTGTGGACGCTGGTTTCTTGGCTCCAATCAAACCAAGGGCACTCCACTCCGCCTCCAGCCTGTCCTGCTAACCTCTCGGCGCCTCTGCCAGACGGAGGGAACGAGATTATGAATAGAGAGACTGTGATAAAGTGCGAGAAGAGAGCATTCATCATTTGCACCCCTCTGGACAACACTATCAGGGAAGATGGACAAGTCCTCTCTCGGCCTTTTCTCTATCCCTAAAGCCGCCTAGCATGTCTTTAGTtcagcctcctcctcctcctccttcagcagcagcagcagacgagcagagagagaaagagagagagaatgatgctTAAATATACAAGTTTATTTCacagtttataaatatatatatataaatataaatatgtatgtaaacACAAGAGAAACCAAGATGGAaaagatgttttttgttttttaaataatgctgtaataatttgtttggtttttaaaatcctggatgtatttattgtatttttttccctatAAGTTGTTGCAAAGTTGCTTGCATGCTTGTTTTTTCTCCAGCCAAGCTCTTAAAGTCTCTCTAAACGTTTTTTGCACCTCCTctcagtaaaaacaaacaaaaagaaaagaagtgaAATGGATTGAGCGCTTCAGGACTCCCATGTTTTTCAACGACCTGCAGTGTGTTGCAAATCCACAGCCGcagtacatacagctctgggaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16893 lncRNA upstream 14138 22476204 ~ 22519541 (+) True G12562
TU16888 lncRNA upstream 15899 22494068 ~ 22517780 (+) False oaf
TU16927 lncRNA upstream 21332 22511530 ~ 22512347 (+) True G12581
TU16875 lncRNA upstream 192166 22300996 ~ 22341513 (+) False spa17
TU16872 lncRNA upstream 192166 22329719 ~ 22341513 (+) False spa17
TU16946 lncRNA downstream 1073 22615582 ~ 22618917 (+) True G12588
TU16950 lncRNA downstream 23107 22637616 ~ 22637893 (+) True G12592
TU16951 lncRNA downstream 30215 22644724 ~ 22645561 (+) True G12593
TU16953 lncRNA downstream 36321 22650830 ~ 22651377 (+) True G12595
TU16960 lncRNA downstream 55410 22669919 ~ 22670219 (+) True G12602
XM_022675164.1 mRNA upstream 4396 22521242 ~ 22529283 (+) True LOC103034910
XM_022675166.1 mRNA upstream 4396 22526182 ~ 22529283 (+) False LOC103034910
XM_007229389.3 mRNA upstream 18582 22474028 ~ 22515097 (+) True oaf
XM_022675158.1 mRNA upstream 98245 22406379 ~ 22435434 (+) False LOC103038252
XM_022675203.1 mRNA downstream 533502 23148011 ~ 23500229 (+) True LOC103034742
XM_022675217.1 mRNA downstream 942208 23556717 ~ 23637004 (+) False cbl
XM_022675213.1 mRNA downstream 942209 23556718 ~ 23638212 (+) True cbl
XM_007258871.3 mRNA downstream 1130675 23745184 ~ 23750130 (+) True rnf26
XM_022675324.1 mRNA downstream 1281983 23896492 ~ 23909676 (+) True LOC103047782
TU16886 other upstream 21043 22473652 ~ 22512636 (+) False oaf
TU16874 other upstream 148707 22329719 ~ 22384972 (+) False spa17
TU16873 other upstream 192166 22329719 ~ 22341513 (+) False spa17
TU16611 other upstream 1070030 21459850 ~ 21463649 (+) True G12362
trnan-guu other upstream 1557402 20976204 ~ 20976277 (+) True trnan-guu
TU17542 other downstream 1239489 23853998 ~ 23855353 (+) True G13067
TU17745 other downstream 2099842 24714351 ~ 24717226 (+) False ccdc9
TU17747 other downstream 2101381 24715890 ~ 24717226 (+) False ccdc9
TU17784 other downstream 2241424 24855933 ~ 24857022 (+) True G13237
TU18064 other downstream 2438004 25052513 ~ 25056103 (+) True G13445